Difference between revisions of "AMCL"

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(Created page with "Category:Gene == Gene Tiso_gene_5425 == * left end position: ** 7226 * transcription direction: ** POSITIVE * right end position: ** 9247 * centisome position: ** 53.57752...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-SYNTHASE-FERREDOXIN-RXN GLUTAMATE-SYNTHASE-FERREDOXIN-RXN] == * direction: ** LEFT-TO-RIG...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_5425 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-SYNTHASE-FERREDOXIN-RXN GLUTAMATE-SYNTHASE-FERREDOXIN-RXN] ==
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* left end position:
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* direction:
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** 7226
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** ferredoxin-dependent_glutamate_synthase
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* right end position:
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* ec number:
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** 9247
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** [http://enzyme.expasy.org/EC/1.4.7.1 EC-1.4.7.1]
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* centisome position:
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** 53.57752   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[1.2.1.31-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[2-KETOGLUTARATE]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[GLN]][c] '''=>''' 2 [[Oxidized-ferredoxins]][c] '''+''' 2 [[GLT]][c]
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***ec-number
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* With common name(s):
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* [[ALCOHOL-DEHYDROG-GENERIC-RXN]]
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** 1 2-oxoglutarate[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 2 H+[c] '''+''' 1 L-glutamine[c] '''=>''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c] '''+''' 2 L-glutamate[c]
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** in-silico_annotation
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***ec-number
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== Genes associated with this reaction  ==
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* [[ALCOHOL-DEHYDROG-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** in-silico_annotation
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* Gene: [[Tiso_gene_1773]]
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***ec-number
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** Source: [[annotation-in-silico_annotation]]
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* [[ALLYSINE-DEHYDROG-RXN]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** in-silico_annotation
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* Gene: [[Tiso_gene_2581]]
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***ec-number
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** Source: [[orthology-athaliana]]
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* [[L-IDITOL-2-DEHYDROGENASE-RXN]]
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** Source: [[orthology-esiliculosus]]
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** in-silico_annotation
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* Gene: [[Tiso_gene_1154]]
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***ec-number
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** Source: [[annotation-experimental_annotation]]
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* [[PROTEIN-TYROSINE-SULFOTRANSFERASE-RXN]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** in-silico_annotation
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** Source: [[orthology-athaliana]]
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***ec-number
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** Source: [[orthology-synechocystis]]
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* [[RXN-10781]]
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** Source: [[orthology-esiliculosus]]
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** in-silico_annotation
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== Pathways ==
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***ec-number
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* [[PWY-6964]], ammonia assimilation cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6964 PWY-6964]
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* [[RXN-10855]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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** in-silico_annotation
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* [[PWY-4341]], L-glutamate biosynthesis V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4341 PWY-4341]
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***ec-number
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[RXN-10911]]
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* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
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** in-silico_annotation
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** '''6''' reactions found over '''9''' reactions in the full pathway
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***ec-number
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== Reconstruction information  ==
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* [[RXN-10915]]
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* Category: [[orthology]]
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** in-silico_annotation
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** Source: [[orthology-athaliana]]
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***ec-number
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*** Tool: [[pantograph]]
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* [[RXN-12448]]
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** Source: [[orthology-synechocystis]]
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** in-silico_annotation
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*** Tool: [[pantograph]]
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***ec-number
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** Source: [[orthology-esiliculosus]]
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* [[RXN-12560]]
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*** Tool: [[pantograph]]
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** in-silico_annotation
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* Category: [[annotation]]
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***ec-number
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** Source: [[annotation-experimental_annotation]]
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* [[RXN-13198]]
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*** Tool: [[pathwaytools]]
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** in-silico_annotation
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** Source: [[annotation-in-silico_annotation]]
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***ec-number
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*** Tool: [[pathwaytools]]
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* [[RXN-13279]]
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** in-silico_annotation
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***ec-number
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* [[RXN-5424]]
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** in-silico_annotation
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***ec-number
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* [[RXN-5901]]
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** in-silico_annotation
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***ec-number
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* [[RXN-7644]]
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** in-silico_annotation
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***ec-number
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* [[RXN-7657]]
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** in-silico_annotation
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***ec-number
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* [[RXN-7693]]
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** in-silico_annotation
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***ec-number
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* [[RXN-7694]]
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** in-silico_annotation
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***ec-number
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* [[RXN-7700]]
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** in-silico_annotation
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***ec-number
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* [[RXN-7706]]
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** in-silico_annotation
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***ec-number
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* [[RXN3O-4113]]
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** in-silico_annotation
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***ec-number
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* [[RXN66-478]]
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** in-silico_annotation
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***ec-number
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== Pathways associated ==
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* [[PWY66-21]]
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* [[PWY-7111]]
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* [[PWY-6587]]
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* [[PWY-5676]]
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* [[PWY-5082]]
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* [[PWY-7118]]
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* [[PWY-7013]]
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* [[PWY-3162]]
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* [[PWY-5751]]
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* [[PWY-6342]]
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* [[PWY1-3]]
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* [[P161-PWY]]
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* [[ETOH-ACETYLCOA-ANA-PWY]]
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* [[FERMENTATION-PWY]]
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* [[PWY-6871]]
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* [[PWY-7396]]
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* [[PWY-5057]]
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* [[PWY-5741]]
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* [[PWY-5076]]
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* [[PWY-6333]]
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* [[PWY-5486]]
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* [[PWY-5079]]
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* [[PWY-5078]]
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* [[PWY-6313]]
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* [[PWY66-425]]
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* [[PWY-5480]]
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* [[PWY3O-4108]]
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* [[PWY-7216]]
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* [[PWY-6802]]
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* [[LYSINE-DEG1-PWY]]
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* [[P122-PWY]]
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* [[PWY66-389]]
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* [[PWY4LZ-257]]
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* [[PWY-4101]]
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== External links  ==
 
== External links  ==
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{{#set: left end position=7226}}
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* LIGAND-RXN:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00021 R00021]
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{{#set: right end position=9247}}
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* UNIPROT:
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{{#set: centisome position=53.57752    }}
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** [http://www.uniprot.org/uniprot/P23225 P23225]
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{{#set: reaction associated=1.2.1.31-RXN|ALCOHOL-DEHYDROG-GENERIC-RXN|ALCOHOL-DEHYDROG-RXN|ALLYSINE-DEHYDROG-RXN|L-IDITOL-2-DEHYDROGENASE-RXN|PROTEIN-TYROSINE-SULFOTRANSFERASE-RXN|RXN-10781|RXN-10855|RXN-10911|RXN-10915|RXN-12448|RXN-12560|RXN-13198|RXN-13279|RXN-5424|RXN-5901|RXN-7644|RXN-7657|RXN-7693|RXN-7694|RXN-7700|RXN-7706|RXN3O-4113|RXN66-478}}
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** [http://www.uniprot.org/uniprot/O67512 O67512]
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{{#set: pathway associated=PWY66-21|PWY-7111|PWY-6587|PWY-5676|PWY-5082|PWY-7118|PWY-7013|PWY-3162|PWY-5751|PWY-6342|PWY1-3|P161-PWY|ETOH-ACETYLCOA-ANA-PWY|FERMENTATION-PWY|PWY-6871|PWY-7396|PWY-5057|PWY-5741|PWY-5076|PWY-6333|PWY-5486|PWY-5079|PWY-5078|PWY-6313|PWY66-425|PWY-5480|PWY3O-4108|PWY-7216|PWY-6802|LYSINE-DEG1-PWY|P122-PWY|PWY66-389|PWY4LZ-257|PWY-4101}}
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** [http://www.uniprot.org/uniprot/P96218 P96218]
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** [http://www.uniprot.org/uniprot/Q06434 Q06434]
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** [http://www.uniprot.org/uniprot/Q43081 Q43081]
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** [http://www.uniprot.org/uniprot/P55037 P55037]
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** [http://www.uniprot.org/uniprot/Q43155 Q43155]
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** [http://www.uniprot.org/uniprot/Q7M242 Q7M242]
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** [http://www.uniprot.org/uniprot/P51375 P51375]
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** [http://www.uniprot.org/uniprot/P55038 P55038]
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** [http://www.uniprot.org/uniprot/Q9SLM4 Q9SLM4]
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** [http://www.uniprot.org/uniprot/Q08258 Q08258]
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** [http://www.uniprot.org/uniprot/O49154 O49154]
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** [http://www.uniprot.org/uniprot/O19906 O19906]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ferredoxin-dependent_glutamate_synthase}}
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{{#set: ec number=EC-1.4.7.1}}
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{{#set: gene associated=Tiso_gene_1773|Tiso_gene_2581|Tiso_gene_1154}}
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{{#set: in pathway=PWY-6964|PWY-4341|PWY-6549}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 17:04, 21 March 2018

Reaction GLUTAMATE-SYNTHASE-FERREDOXIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ferredoxin-dependent_glutamate_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6964, ammonia assimilation cycle II: PWY-6964
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-4341, L-glutamate biosynthesis V: PWY-4341
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6549, L-glutamine biosynthesis III: PWY-6549
    • 6 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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