Difference between revisions of "CPD-286"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17926 RXN-17926] == * direction: ** LEFT-TO-RIGHT * common name: ** gtp-binding_protein * Synon...")
(Created page with "Category:Gene == Gene Tiso_gene_6952 == * right end position: ** 5460 * transcription direction: ** POSITIVE * left end position: ** 2786 * centisome position: ** 23.90800...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17926 RXN-17926] ==
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== Gene Tiso_gene_6952 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 5460
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* common name:
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* transcription direction:
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** gtp-binding_protein
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** POSITIVE
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* left end position:
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** 2786
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* centisome position:
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** 23.908007   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[HYDROXYPYRROLINEDEH-RXN]]
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** 1 [[5-Phospho-RNA]][c] '''+''' 1 [[RNA-Ligase-L-lysine-adenylate]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[RNA-Ligase-L-lysine]][c] '''+''' 1 [[A-5-prime-PP-5-prime-RNA]][c]
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** Source: [[orthology-synechocystis]]
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* With common name(s):
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* Reaction: [[PYRROLINECARBDEHYDROG-RXN]]
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** 1 a 5'-phospho-ribonucleoside-[RNA][c] '''+''' 1 a [DNA ligase]-N6-(5'-adenylyl)-L-lysine[c] '''+''' 2 H+[c] '''=>''' 1 an [RNA ligase]-L-lysine[c] '''+''' 1 a 5'-(5'-diphosphoadenosine)-(ribonucleoside)-[RNA][c]
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** Source: [[orthology-synechocystis]]
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* Reaction: [[RXN-14116]]
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== Genes associated with this reaction  ==
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** Source: [[orthology-synechocystis]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[SSNOm]]
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* [[Tiso_gene_8397]]
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** Source: [[orthology-creinhardtii]]
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** IN-SILICO_ANNOTATION
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* Reaction: [[SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN]]
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***EC-NUMBER
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* [[Tiso_gene_8396]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_8398]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[SUCCSEMIALDDEHYDROG-RXN]]
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** Source: [[orthology-synechocystis]]
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== Pathways associated ==
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* [[ARGASEDEG-PWY]]
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* [[GLUDEG-I-PWY]]
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* [[PWY-4321]]
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* [[PROUT-PWY]]
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* [[P181-PWY]]
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* [[PWY-6993]]
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* [[PWY-6537]]
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* [[PWY-6473]]
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* [[PWY-6535]]
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* [[PWY-6853]]
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* [[3-HYDROXYPHENYLACETATE-DEGRADATION-PWY]]
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* [[P105-PWY]]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=5460}}
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{{#set: common name=gtp-binding_protein}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: gene associated=Tiso_gene_8397|Tiso_gene_8396|Tiso_gene_8398}}
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{{#set: left end position=2786}}
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{{#set: in pathway=}}
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{{#set: centisome position=23.908007    }}
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{{#set: reconstruction category=annotation}}
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{{#set: reaction associated=HYDROXYPYRROLINEDEH-RXN|PYRROLINECARBDEHYDROG-RXN|RXN-14116|SSNOm|SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN|SUCCSEMIALDDEHYDROG-RXN}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: pathway associated=ARGASEDEG-PWY|GLUDEG-I-PWY|PWY-4321|PROUT-PWY|P181-PWY|PWY-6993|PWY-6537|PWY-6473|PWY-6535|PWY-6853|3-HYDROXYPHENYLACETATE-DEGRADATION-PWY|P105-PWY}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 16:04, 21 March 2018

Gene Tiso_gene_6952

  • right end position:
    • 5460
  • transcription direction:
    • POSITIVE
  • left end position:
    • 2786
  • centisome position:
    • 23.908007
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-286&oldid=38530"