Difference between revisions of "CPD-7004"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14774 RXN-14774] == * direction: ** LEFT-TO-RIGHT * common name: ** thiolase ** acetyl-_c-acety...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.99.18-RXN 4.2.99.18-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** formamidopyrimidine...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14774 RXN-14774] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.99.18-RXN 4.2.99.18-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** thiolase
+
** formamidopyrimidine-dna_glycosylase
−
** acetyl-_c-acetyltransferase
+
** endonuclease_iii
−
** 3-ketoacyl-_thiolase
+
** dna-(apurinic_or_apyrimidinic_site)_lyase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
+
** [http://enzyme.expasy.org/EC/4.2.99.18 EC-4.2.99.18]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-15667]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[CPD-15668]][c]
+
** 1 [[DNA-containing-abasic-Sites]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''+''' 1 [[3-terminal-unsaturated-sugars]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 6-cis, 3-oxo-tridecenoyl-CoA[c] '''+''' 1 coenzyme A[c] '''=>''' 1 acetyl-CoA[c] '''+''' 1 4-cis-undecenoyl-CoA[c]
+
** 1 a DNA containing an apurinic/apyrimidinic site[c] '''=>''' 1 H+[c] '''+''' 1 a 5'-phospho-[DNA][c] '''+''' 1 a 3'-terminal unsaturated sugar[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10116]]
+
* Gene: [[Tiso_gene_6558]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
* Gene: [[Tiso_gene_5102]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_3856]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_17380]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_15327]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[annotation-experimental_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_17451]]
+
* Gene: [[Tiso_gene_14609]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
* Gene: [[Tiso_gene_1280]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_3855]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7337]], 10-cis-heptadecenoyl-CoA degradation (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7337 PWY-7337]
 
−
** '''3''' reactions found over '''12''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P0AB83 P0AB83]
 +
** [http://www.uniprot.org/uniprot/P28352 P28352]
 +
** [http://www.uniprot.org/uniprot/Q58829 Q58829]
 +
** [http://www.uniprot.org/uniprot/Q9PHS1 Q9PHS1]
 +
** [http://www.uniprot.org/uniprot/Q9JVT0 Q9JVT0]
 +
** [http://www.uniprot.org/uniprot/Q9PNL1 Q9PNL1]
 +
** [http://www.uniprot.org/uniprot/P44319 P44319]
 +
** [http://www.uniprot.org/uniprot/Q9CGM5 Q9CGM5]
 +
** [http://www.uniprot.org/uniprot/P04418 P04418]
 +
** [http://www.uniprot.org/uniprot/P27695 P27695]
 +
** [http://www.uniprot.org/uniprot/P23196 P23196]
 +
** [http://www.uniprot.org/uniprot/P22936 P22936]
 +
** [http://www.uniprot.org/uniprot/P43138 P43138]
 +
** [http://www.uniprot.org/uniprot/P95945 P95945]
 +
** [http://www.uniprot.org/uniprot/P50525 P50525]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=thiolase}}
+
{{#set: common name=formamidopyrimidine-dna_glycosylase}}
−
{{#set: common name=acetyl-_c-acetyltransferase}}
+
{{#set: common name=endonuclease_iii}}
−
{{#set: common name=3-ketoacyl-_thiolase}}
+
{{#set: common name=dna-(apurinic_or_apyrimidinic_site)_lyase}}
−
{{#set: ec number=EC-2.3.1.16}}
+
{{#set: ec number=EC-4.2.99.18}}
−
{{#set: gene associated=Tiso_gene_10116|Tiso_gene_3856|Tiso_gene_15327|Tiso_gene_17451|Tiso_gene_3855}}
+
{{#set: gene associated=Tiso_gene_6558|Tiso_gene_5102|Tiso_gene_17380|Tiso_gene_14609|Tiso_gene_1280}}
−
{{#set: in pathway=PWY-7337}}
+
{{#set: in pathway=}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:04, 21 March 2018

Reaction 4.2.99.18-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • formamidopyrimidine-dna_glycosylase
    • endonuclease_iii
    • dna-(apurinic_or_apyrimidinic_site)_lyase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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