Difference between revisions of "Tiso gene 16559"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPHINGANINE-1-PHOSPHATE-ALDOLASE-RXN SPHINGANINE-1-PHOSPHATE-ALDOLASE-RXN] == * direction: ** LEFT-...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13615 RXN-13615] == * direction: ** LEFT-TO-RIGHT * common name: ** acyl-coenzyme_a_oxidase **...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPHINGANINE-1-PHOSPHATE-ALDOLASE-RXN SPHINGANINE-1-PHOSPHATE-ALDOLASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13615 RXN-13615] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** sphinganine1-phosphate_aldolase
+
** acyl-coenzyme_a_oxidase
 +
** ORF
 +
** acyl-CoA_dehydrogenase
 +
** acyl-_dehydrogenase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.1.2.27 EC-4.1.2.27]
+
** [http://enzyme.expasy.org/EC/1.3.8.7 EC-1.3.8.7]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-649]][c] '''=>''' 1 [[PHOSPHORYL-ETHANOLAMINE]][c] '''+''' 1 [[PALMITALDEHYDE]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[CPD-10267]][c] '''+''' 1 [[ETF-Oxidized]][c] '''=>''' 1 [[T2-DECENOYL-COA]][c] '''+''' 1 [[ETF-Reduced]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 sphinganine 1-phosphate[c] '''=>''' 1 O-phosphoethanolamine[c] '''+''' 1 palmitaldehyde[c]
+
** 1 H+[c] '''+''' 1 decanoyl-CoA[c] '''+''' 1 an oxidized electron-transfer flavoprotein[c] '''=>''' 1 trans-dec-2-enoyl-CoA[c] '''+''' 1 a reduced electron-transfer flavoprotein[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_105]]
+
* Gene: [[Tiso_gene_18566]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
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*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[athaliana]]
+
* Gene: [[Tiso_gene_16631]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17967]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6475]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_883]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5991]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7119]], sphingolipid recycling and degradation (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7119 PWY-7119]
+
* [[PWY-7094]], fatty acid salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7094 PWY-7094]
−
** '''5''' reactions found over '''11''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18594 18594]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28355 28355]
−
* LIGAND-RXN:
+
−
** [http://www.genome.jp/dbget-bin/www_bget?R02464 R02464]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=sphinganine1-phosphate_aldolase}}
+
{{#set: common name=acyl-coenzyme_a_oxidase}}
−
{{#set: ec number=EC-4.1.2.27}}
+
{{#set: common name=ORF}}
−
{{#set: gene associated=Tiso_gene_105}}
+
{{#set: common name=acyl-CoA_dehydrogenase}}
−
{{#set: in pathway=PWY-7119}}
+
{{#set: common name=acyl-_dehydrogenase}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: ec number=EC-1.3.8.7}}
−
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
+
{{#set: gene associated=Tiso_gene_18566|Tiso_gene_16631|Tiso_gene_17967|Tiso_gene_6475|Tiso_gene_883|Tiso_gene_5991}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: in pathway=PWY-7094}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Revision as of 17:05, 21 March 2018

Reaction RXN-13615

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • acyl-coenzyme_a_oxidase
    • ORF
    • acyl-CoA_dehydrogenase
    • acyl-_dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H+[c] + 1 decanoyl-CoA[c] + 1 an oxidized electron-transfer flavoprotein[c] => 1 trans-dec-2-enoyl-CoA[c] + 1 a reduced electron-transfer flavoprotein[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7094, fatty acid salvage: PWY-7094
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links






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