Difference between revisions of "Tiso gene 3363"

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(Created page with "Category:Gene == Gene Tiso_gene_17170 == * left end position: ** 2287 * transcription direction: ** NEGATIVE * right end position: ** 3627 * centisome position: ** 59.1108...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-480 RXN66-480] == * direction: ** LEFT-TO-RIGHT * common name: ** phytenoyl-CoA synthetase **...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_17170 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-480 RXN66-480] ==
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* left end position:
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* direction:
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** 2287
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** phytenoyl-CoA synthetase
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* right end position:
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** polyketide_synthase
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** 3627
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** long_chain_acyl-_synthetase
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* centisome position:
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** ORF
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** 59.110878   
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** acyl-_synthetase
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
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** FNR
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[1.18.1.2-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CPD-14927]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-14928]][c] '''+''' 1 [[AMP]][c]
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***ec-number
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* With common name(s):
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** experimental_annotation
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** 1 coenzyme A[c] '''+''' 1 ATP[c] '''+''' 1 phytenate[c] '''=>''' 1 diphosphate[c] '''+''' 1 phytenoyl-CoA[c] '''+''' 1 AMP[c]
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***ec-number
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* [[RXN-17897]]
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== Genes associated with this reaction  ==
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** in-silico_annotation
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Genes have been associated with this reaction based on different elements listed below.
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***ec-number
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* Gene: [[Tiso_gene_348]]
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** experimental_annotation
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** Source: [[annotation-in-silico_annotation]]
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***ec-number
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*** Assignment: EC-NUMBER
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== Pathways associated ==
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** Source: [[annotation-experimental_annotation]]
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* [[PWY-7230]]
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*** Assignment: EC-NUMBER
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* [[PWY-101]]
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* Gene: [[Tiso_gene_13394]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_135]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_136]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_500]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_7855]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_4191]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_10876]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_9394]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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== Pathways ==
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* [[PWY66-389]], phytol degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-389 PWY66-389]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=2287}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: common name=phytenoyl-CoA synthetase}}
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{{#set: right end position=3627}}
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{{#set: common name=polyketide_synthase}}
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{{#set: centisome position=59.110878    }}
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{{#set: common name=long_chain_acyl-_synthetase}}
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{{#set: common name=FNR}}
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{{#set: common name=ORF}}
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{{#set: reaction associated=1.18.1.2-RXN|RXN-17897}}
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{{#set: common name=acyl-_synthetase}}
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{{#set: pathway associated=PWY-7230|PWY-101}}
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{{#set: ec number=EC-6.2.1.3}}
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{{#set: gene associated=Tiso_gene_348|Tiso_gene_13394|Tiso_gene_135|Tiso_gene_136|Tiso_gene_500|Tiso_gene_7855|Tiso_gene_4191|Tiso_gene_10876|Tiso_gene_9394}}
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{{#set: in pathway=PWY66-389}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 17:05, 21 March 2018

Reaction RXN66-480

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • phytenoyl-CoA synthetase
    • polyketide_synthase
    • long_chain_acyl-_synthetase
    • ORF
    • acyl-_synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 coenzyme A[c] + 1 ATP[c] + 1 phytenate[c] => 1 diphosphate[c] + 1 phytenoyl-CoA[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY66-389, phytol degradation: PWY66-389
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_3363&oldid=38677"