Difference between revisions of "4.1.2.20-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTDECARBOX-RXN GLUTDECARBOX-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** glutamate_dec...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17796 RXN-17796] == * direction: ** LEFT-TO-RIGHT * common name: ** Acyl-CoA dehydrogenase ** a...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTDECARBOX-RXN GLUTDECARBOX-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17796 RXN-17796] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** glutamate_decarboxylase_beta
+
** Acyl-CoA dehydrogenase
 +
** acyl-_dehydrogenase
 +
** acyl-CoA_dehydrogenase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.1.1.15 EC-4.1.1.15]
+
** [http://enzyme.expasy.org/EC/1.3.8 EC-1.3.8]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[GLT]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[4-AMINO-BUTYRATE]][c]
+
** 1 [[ETF-Oxidized]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD-19148]][c] '''=>''' 1 [[ETF-Reduced]][c] '''+''' 1 [[CPD-19150]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-glutamate[c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 4-aminobutanoate[c]
+
** 1 an oxidized electron-transfer flavoprotein[c] '''+''' 1 H+[c] '''+''' 1 (5Z)-dodecenoyl-CoA[c] '''=>''' 1 a reduced electron-transfer flavoprotein[c] '''+''' 1 (2E,5Z)-dodecenoyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10395]]
+
* Gene: [[Tiso_gene_8272]]
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_9927]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_16113]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[athaliana]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[synechocystis]]
+
* Gene: [[Tiso_gene_8271]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_5449]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_6475]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_16631]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY0-1305]], L-glutamate degradation IX (via 4-aminobutanoate): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1305 PWY0-1305]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[GLUDEG-I-PWY]], GABA shunt: [http://metacyc.org/META/NEW-IMAGE?object=GLUDEG-I-PWY GLUDEG-I-PWY]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-4321]], L-glutamate degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4321 PWY-4321]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17785 17785]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00261 R00261]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P20228 P20228]
 
−
** [http://www.uniprot.org/uniprot/Q05329 Q05329]
 
−
** [http://www.uniprot.org/uniprot/P18088 P18088]
 
−
** [http://www.uniprot.org/uniprot/P14748 P14748]
 
−
** [http://www.uniprot.org/uniprot/Q07346 Q07346]
 
−
** [http://www.uniprot.org/uniprot/Q99259 Q99259]
 
−
** [http://www.uniprot.org/uniprot/P69910 P69910]
 
−
** [http://www.uniprot.org/uniprot/Q9CG20 Q9CG20]
 
−
** [http://www.uniprot.org/uniprot/P48321 P48321]
 
−
** [http://www.uniprot.org/uniprot/P48319 P48319]
 
−
** [http://www.uniprot.org/uniprot/Q05683 Q05683]
 
−
** [http://www.uniprot.org/uniprot/Q24062 Q24062]
 
−
** [http://www.uniprot.org/uniprot/P69908 P69908]
 
−
** [http://www.uniprot.org/uniprot/P48320 P48320]
 
−
** [http://www.uniprot.org/uniprot/Q59956 Q59956]
 
−
** [http://www.uniprot.org/uniprot/P48318 P48318]
 
−
** [http://www.uniprot.org/uniprot/Q49854 Q49854]
 
−
** [http://www.uniprot.org/uniprot/Q49855 Q49855]
 
−
** [http://www.uniprot.org/uniprot/Q49863 Q49863]
 
−
** [http://www.uniprot.org/uniprot/O81101 O81101]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=glutamate_decarboxylase_beta}}
+
{{#set: common name=Acyl-CoA dehydrogenase}}
−
{{#set: ec number=EC-4.1.1.15}}
+
{{#set: common name=acyl-_dehydrogenase}}
−
{{#set: gene associated=Tiso_gene_10395|Tiso_gene_9927}}
+
{{#set: common name=acyl-CoA_dehydrogenase}}
−
{{#set: in pathway=PWY0-1305|GLUDEG-I-PWY|PWY-4321}}
+
{{#set: ec number=EC-1.3.8}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: gene associated=Tiso_gene_8272|Tiso_gene_16113|Tiso_gene_8271|Tiso_gene_5449|Tiso_gene_6475|Tiso_gene_16631}}
−
{{#set: reconstruction source=orthology-creinhardtii|orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis}}
+
{{#set: in pathway=}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Revision as of 17:09, 21 March 2018

Reaction RXN-17796

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Acyl-CoA dehydrogenase
    • acyl-_dehydrogenase
    • acyl-CoA_dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 an oxidized electron-transfer flavoprotein[c] + 1 H+[c] + 1 (5Z)-dodecenoyl-CoA[c] => 1 a reduced electron-transfer flavoprotein[c] + 1 (2E,5Z)-dodecenoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

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