Difference between revisions of "R96"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11999 RXN-11999] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORGENOXI-RXN PROTOPORGENOXI-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** protoporp...") |
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[[Category:Reaction]] | [[Category:Reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORGENOXI-RXN PROTOPORGENOXI-RXN] == |
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
+ | * common name: | ||
+ | ** protoporphyrinogen_ix_oxidase_usually_abbreviated | ||
+ | * ec number: | ||
+ | ** [http://enzyme.expasy.org/EC/1.3.3.4 EC-1.3.3.4] | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** 1 [[ | + | ** 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 3 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[PROTOPORPHYRIN_IX]][c] '''+''' 3 [[HYDROGEN-PEROXIDE]][c] |
* With common name(s): | * With common name(s): | ||
− | ** 1 | + | ** 1 protoporphyrinogen IX[c] '''+''' 3 oxygen[c] '''=>''' 1 protoporphyrin IX[c] '''+''' 3 hydrogen peroxide[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
− | * [[ | + | * Gene: [[Tiso_gene_11986]] |
− | ** [[ | + | ** Source: [[orthology-synechocystis]] |
− | * [[ | + | * Gene: [[Tiso_gene_15401]] |
− | ** [[ | + | ** Source: [[annotation-in-silico_annotation]] |
+ | *** Assignment: EC-NUMBER | ||
+ | ** Source: [[annotation-experimental_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | ** Source: [[orthology-athaliana]] | ||
+ | ** Source: [[orthology-esiliculosus]] | ||
== Pathways == | == Pathways == | ||
− | * [[PWY- | + | * [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415] |
− | ** ''' | + | ** '''5''' reactions found over '''6''' reactions in the full pathway |
+ | * [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II] | ||
+ | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN] | ||
+ | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159] | ||
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
+ | ** Source: [[orthology-athaliana]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | ** Source: [[orthology-synechocystis]] | ||
+ | *** Tool: [[pantograph]] | ||
** Source: [[orthology-esiliculosus]] | ** Source: [[orthology-esiliculosus]] | ||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
+ | * Category: [[manual]] | ||
+ | ** Source: [[manual-primary_network]] | ||
+ | * Category: [[annotation]] | ||
+ | ** Source: [[annotation-experimental_annotation]] | ||
+ | *** Tool: [[pathwaytools]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25576 25576] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R03222 R03222] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P50336 P50336] | ||
+ | ** [http://www.uniprot.org/uniprot/Q49404 Q49404] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CHX0 Q9CHX0] | ||
+ | ** [http://www.uniprot.org/uniprot/P0ACB4 P0ACB4] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M1R6 Q7M1R6] | ||
+ | ** [http://www.uniprot.org/uniprot/P51175 P51175] | ||
+ | ** [http://www.uniprot.org/uniprot/O24163 O24163] | ||
+ | ** [http://www.uniprot.org/uniprot/O24164 O24164] | ||
+ | ** [http://www.uniprot.org/uniprot/O64384 O64384] | ||
+ | ** [http://www.uniprot.org/uniprot/O64385 O64385] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
− | {{#set: gene associated= | + | {{#set: common name=protoporphyrinogen_ix_oxidase_usually_abbreviated}} |
− | {{#set: in pathway=PWY- | + | {{#set: ec number=EC-1.3.3.4}} |
− | {{#set: reconstruction category=orthology}} | + | {{#set: gene associated=Tiso_gene_11986|Tiso_gene_15401}} |
− | {{#set: reconstruction source=orthology-esiliculosus}} | + | {{#set: in pathway=PWY0-1415|HEME-BIOSYNTHESIS-II|CHLOROPHYLL-SYN|PWY-7159}} |
− | {{#set: reconstruction tool=pantograph}} | + | {{#set: reconstruction category=orthology|manual|annotation}} |
+ | {{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Revision as of 16:09, 21 March 2018
Contents
Reaction PROTOPORGENOXI-RXN
- direction:
- LEFT-TO-RIGHT
- common name:
- protoporphyrinogen_ix_oxidase_usually_abbreviated
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 PROTOPORPHYRINOGEN[c] + 3 OXYGEN-MOLECULE[c] => 1 PROTOPORPHYRIN_IX[c] + 3 HYDROGEN-PEROXIDE[c]
- With common name(s):
- 1 protoporphyrinogen IX[c] + 3 oxygen[c] => 1 protoporphyrin IX[c] + 3 hydrogen peroxide[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_11986
- Source: orthology-synechocystis
- Gene: Tiso_gene_15401
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-experimental_annotation
- Assignment: EC-NUMBER
- Source: orthology-athaliana
- Source: orthology-esiliculosus
- Source: annotation-in-silico_annotation
Pathways
- PWY0-1415, superpathway of heme biosynthesis from uroporphyrinogen-III: PWY0-1415
- 5 reactions found over 6 reactions in the full pathway
- HEME-BIOSYNTHESIS-II, heme biosynthesis I (aerobic): HEME-BIOSYNTHESIS-II
- 4 reactions found over 4 reactions in the full pathway
- CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): CHLOROPHYLL-SYN
- 9 reactions found over 9 reactions in the full pathway
- PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): PWY-7159
- 8 reactions found over 9 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-athaliana
- Tool: pantograph
- Source: orthology-synechocystis
- Tool: pantograph
- Source: orthology-esiliculosus
- Tool: pantograph
- Source: orthology-athaliana
- Category: manual
- Source: manual-primary_network
- Category: annotation
- Source: annotation-experimental_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-experimental_annotation
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: