Difference between revisions of "Category:Pathway"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17855 RXN-17855] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SHIKIMATE-5-DEHYDROGENASE-RXN SHIKIMATE-5-DEHYDROGENASE-RXN] == * direction: ** LEFT-TO-RIGHT * com...") |
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Line 1: | Line 1: | ||
[[Category:Reaction]] | [[Category:Reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SHIKIMATE-5-DEHYDROGENASE-RXN SHIKIMATE-5-DEHYDROGENASE-RXN] == |
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
+ | * common name: | ||
+ | ** pentafunctional_protein | ||
* ec number: | * ec number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/1.1.1.25 EC-1.1.1.25] |
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** 1 [[ | + | ** 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[3-DEHYDRO-SHIKIMATE]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[SHIKIMATE]][c] |
* With common name(s): | * With common name(s): | ||
− | ** 1 | + | ** 1 H+[c] '''+''' 1 NADPH[c] '''+''' 1 3-dehydroshikimate[c] '''=>''' 1 NADP+[c] '''+''' 1 shikimate[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
+ | Genes have been associated with this reaction based on different elements listed below. | ||
+ | * Gene: [[Tiso_gene_5752]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | * Gene: [[Tiso_gene_5753]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | ** Source: [[orthology-esiliculosus]] | ||
== Pathways == | == Pathways == | ||
− | * [[PWY- | + | * [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163] |
− | ** ''' | + | ** '''6''' reactions found over '''6''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
+ | * Category: [[orthology]] | ||
+ | ** Source: [[orthology-esiliculosus]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | * Category: [[manual]] | ||
+ | ** Source: [[manual-primary_network]] | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
** Source: [[annotation-in-silico_annotation]] | ** Source: [[annotation-in-silico_annotation]] | ||
− | |||
− | |||
*** Tool: [[pathwaytools]] | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17737 17737] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R02413 R02413] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P07547 P07547] | ||
+ | ** [http://www.uniprot.org/uniprot/P08566 P08566] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58484 Q58484] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PIA0 Q9PIA0] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A6D5 P0A6D5] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CES7 Q9CES7] | ||
+ | ** [http://www.uniprot.org/uniprot/Q44606 Q44606] | ||
+ | ** [http://www.uniprot.org/uniprot/Q44608 Q44608] | ||
+ | ** [http://www.uniprot.org/uniprot/Q44609 Q44609] | ||
+ | ** [http://www.uniprot.org/uniprot/Q44610 Q44610] | ||
+ | ** [http://www.uniprot.org/uniprot/Q44611 Q44611] | ||
+ | ** [http://www.uniprot.org/uniprot/Q44612 Q44612] | ||
+ | ** [http://www.uniprot.org/uniprot/P15770 P15770] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42947 Q42947] | ||
+ | ** [http://www.uniprot.org/uniprot/O65917 O65917] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
− | {{#set: ec number=EC- | + | {{#set: common name=pentafunctional_protein}} |
− | {{#set: in pathway=PWY- | + | {{#set: ec number=EC-1.1.1.25}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: gene associated=Tiso_gene_5752|Tiso_gene_5753}} |
− | {{#set: reconstruction source=annotation-in-silico_annotation| | + | {{#set: in pathway=PWY-6163}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction category=orthology|manual|annotation}} |
+ | {{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Revision as of 17:09, 21 March 2018
Contents
Reaction SHIKIMATE-5-DEHYDROGENASE-RXN
- direction:
- LEFT-TO-RIGHT
- common name:
- pentafunctional_protein
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 PROTON[c] + 1 NADPH[c] + 1 3-DEHYDRO-SHIKIMATE[c] => 1 NADP[c] + 1 SHIKIMATE[c]
- With common name(s):
- 1 H+[c] + 1 NADPH[c] + 1 3-dehydroshikimate[c] => 1 NADP+[c] + 1 shikimate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_5752
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_5753
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: orthology-esiliculosus
- Source: annotation-in-silico_annotation
Pathways
- PWY-6163, chorismate biosynthesis from 3-dehydroquinate: PWY-6163
- 6 reactions found over 6 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-esiliculosus
- Tool: pantograph
- Source: orthology-esiliculosus
- Category: manual
- Source: manual-primary_network
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
Pages in category "Pathway"
The following 200 pages are in this category, out of 1,205 total.
(previous page) (next page)P
- PWY-5525
- PWY-5526
- PWY-5530
- PWY-5532
- PWY-561
- PWY-5629
- PWY-7589
- PWY-5640
- PWY-5642
- PWY-5647
- PWY-7308
- PWY-5651
- PWY-5652
- PWY-3341
- PWY-5661
- PWY-5663
- PWY-5664
- PWY-5665
- PWY-5667
- PWY-5668
- PWY-5669
- PWY-5675
- PWY-5676
- PWY-6120
- PWY-5677
- PWY-5690
- PWY-6605
- PWY-5691
- PWY-6309
- PWY-5698
- PWY-5704
- PWY-5706
- PWY-5707
- PWY-5885
- PWY-5708
- PWY-5710
- PWY-5723
- PWY-7442
- PWY-5737
- PWY-5738
- PWY-5739
- PWY-5176
- PWY-5740
- PWY-5741
- PWY-5743
- PWY-5744
- PWY-5749
- PWY-5750
- PWY-5751
- PWY-5754
- PWY-5084
- PWY-6118
- PWY-5760
- PWY-5768
- PWY-5785
- PWY-5789
- PWY-5805
- PWY-6470
- PWY-581
- PWY-5826
- PWY-5835
- PWY-5837
- PWY-6974
- PWY-5856
- PWY-5857
- PWY-5871
- PWY-5872
- PWY-5350
- PWY-5874
- PWY66-368
- PWY-5886
- PWY-5901
- PWY-5905
- PWY-6002
- PWY-5912
- PWY-5913
- P345-PWY
- PWY-5915
- PWY-5923
- PWY-5924
- PWY-5938
- PWY-5939
- PWY-5940
- PWY-5942
- PWY-5943
- PWY-5944
- PWY-5945
- PWY-5946
- PWY-5951
- PWY-5956
- PWY-5958
- PWY-5965
- PWY-5966
- PWY-5970
- PWY-5971
- PWY-5254
- PWY-5972
- PWY-5973
- PWY-5981
- PWY-5989
- PWY-5994
- PWY-5996
- PWY-6000
- PWY-6001
- PWY-6012
- PWY-6019
- PWY-6632
- PWY-6032
- PWY-6981
- PWY-7709
- PWY-6035
- PWY-6061
- PWY-6064
- PWY-6074
- PWY-7432
- PWY-6075
- P105-PWY
- PWY-6087
- PWY-6920
- PWY-6893
- PWY-6089
- PWY-7091
- PWY-6098
- PWY-7498
- PWY-6115
- PWY-6121
- PWY-6122
- PWY-6123
- PWY-6124
- PWY-6129
- PWY-6131
- PWY-6133
- PWY-6138
- PWY-6140
- PWY-6142
- PWY-6146
- PWY-6147
- PWY-6148
- PWY3O-6
- PWY-6151
- PWY-6154
- PWY-6163
- PWY-6457
- PWY-6164
- PWY-6167
- PWY-6168
- PWY-6174
- PWY-6181
- PWY-6185
- PWY-6193
- PWY-621
- PWY-622
- PWY-5466
- PWY-6260
- PWY-6261
- PWY-1581
- PWY-6268
- PWY-6269
- PWY-6277
- PWY-6281
- PWY-6287
- PWY-63
- PWY-6303
- PWY-6307
- PWY-6308
- PWY66-161
- PWY-6317
- PWY-6318
- PWY-6320
- PWY-6322
- PWY-6324
- PWY-7760
- PWY-6325
- PWY-4722
- PWY-6326
- PWY-6328
- PWY-6333
- PWY-6339
- PWY-6342
- PWY-6351
- PWY-6352
- PWY-6361
- PWY-6362
- PWY-6364
- PWY-6365
- PWY-5025
- PWY-6366
- P224-PWY
- PWY-6367
- PWY-6368
- PWY-6369
- PWY-6370