Difference between revisions of "FARNESYL-PP"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17874 RXN-17874] == * direction: ** LEFT-TO-RIGHT * common name: ** methionine_aminopeptidase *...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=FARNESYL-PP FARNESYL-PP] == * smiles: ** CC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)[O-])(=O)[O-])C)C)C *...")
 
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17874 RXN-17874] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=FARNESYL-PP FARNESYL-PP] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** CC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)[O-])(=O)[O-])C)C)C
 
* common name:
 
* common name:
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** methionine_aminopeptidase
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** (2E,6E)-farnesyl diphosphate
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* ec number:
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* inchi key:
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** [http://enzyme.expasy.org/EC/3.4.11.18 EC-3.4.11.18]
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** InChIKey=VWFJDQUYCIWHTN-YFVJMOTDSA-K
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* molecular weight:
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** 379.306   
 
* Synonym(s):
 
* Synonym(s):
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** 2-trans,6-trans-farnesyl diphosphate
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** FPP
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** trans, trans-farnesyl diphosphate
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** farnesyl-PP
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** farnesyl pyrophosphate
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** ω,E,E-farnesyl diphosphate
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** farnesyl diphosphate
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** (E,E)-farnesyl diphosphate
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** all-trans-farnesyl diphosphate
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** C15-PP
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[RXN-8999]]
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** 1 [[L-methionyl-L-cysteinyl-Protein]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[N-terminal-L-cysteine]][c] '''+''' 1 [[MET]][c]
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* [[GGPS]]
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* With common name(s):
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* [[FARNESYLTRANSTRANSFERASE-RXN]]
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** 1 an N-terminal-L-methionyl-L-cysteinyl-[protein][c] '''+''' 1 H2O[c] '''=>''' 1 an N-terminal L-cysteinyl-[protein][c] '''+''' 1 L-methionine[c]
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== Reaction(s) known to produce the compound ==
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* [[FPPSYN-RXN]]
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== Genes associated with this reaction  ==
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== Reaction(s) of unknown directionality ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[2.5.1.58-RXN]]
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* Gene: [[Tiso_gene_4247]]
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* [[RXN0-5180]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_5715]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[PWY-7799]], Arg/N-end rule pathway (eukaryotic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7799 PWY-7799]
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** '''8''' reactions found over '''14''' reactions in the full pathway
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* [[PWY-7800]], Ac/N-end rule pathway: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7800 PWY-7800]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* CAS : 13058-04-3
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{{#set: common name=methionine_aminopeptidase}}
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* BIGG : frdp
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{{#set: ec number=EC-3.4.11.18}}
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* PUBCHEM:
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{{#set: gene associated=Tiso_gene_4247|Tiso_gene_5715}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=15983959 15983959]
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{{#set: in pathway=PWY-7799|PWY-7800}}
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* KNAPSACK : C00007268
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{{#set: reconstruction category=annotation}}
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* HMDB : HMDB00961
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
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* LIGAND-CPD:
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{{#set: reconstruction tool=pathwaytools}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00448 C00448]
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* CHEMSPIDER:
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** [http://www.chemspider.com/Chemical-Structure.11633047.html 11633047]
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* CHEBI:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=175763 175763]
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* METABOLIGHTS : MTBLC175763
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{{#set: smiles=CC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)[O-])(=O)[O-])C)C)C}}
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{{#set: common name=(2E,6E)-farnesyl diphosphate}}
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{{#set: inchi key=InChIKey=VWFJDQUYCIWHTN-YFVJMOTDSA-K}}
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{{#set: molecular weight=379.306    }}
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{{#set: common name=2-trans,6-trans-farnesyl diphosphate|FPP|trans, trans-farnesyl diphosphate|farnesyl-PP|farnesyl pyrophosphate|ω,E,E-farnesyl diphosphate|farnesyl diphosphate|(E,E)-farnesyl diphosphate|all-trans-farnesyl diphosphate|C15-PP}}
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{{#set: consumed by=RXN-8999|GGPS|FARNESYLTRANSTRANSFERASE-RXN}}
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{{#set: produced by=FPPSYN-RXN}}
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{{#set: reversible reaction associated=2.5.1.58-RXN|RXN0-5180}}

Latest revision as of 20:04, 21 March 2018

Metabolite FARNESYL-PP

  • smiles:
    • CC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)[O-])(=O)[O-])C)C)C
  • common name:
    • (2E,6E)-farnesyl diphosphate
  • inchi key:
    • InChIKey=VWFJDQUYCIWHTN-YFVJMOTDSA-K
  • molecular weight:
    • 379.306
  • Synonym(s):
    • 2-trans,6-trans-farnesyl diphosphate
    • FPP
    • trans, trans-farnesyl diphosphate
    • farnesyl-PP
    • farnesyl pyrophosphate
    • ω,E,E-farnesyl diphosphate
    • farnesyl diphosphate
    • (E,E)-farnesyl diphosphate
    • all-trans-farnesyl diphosphate
    • C15-PP

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 13058-04-3
  • BIGG : frdp
  • PUBCHEM:
  • KNAPSACK : C00007268
  • HMDB : HMDB00961
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:
  • METABOLIGHTS : MTBLC175763
"CC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)[O-])(=O)[O-])C)C)C" cannot be used as a page name in this wiki.




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