Difference between revisions of "PWY-6475"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BRANCHED-CHAINAMINOTRANSFERVAL-RXN BRANCHED-CHAINAMINOTRANSFERVAL-RXN] == * direction: ** REVERSIBL...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-11...")
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BRANCHED-CHAINAMINOTRANSFERVAL-RXN BRANCHED-CHAINAMINOTRANSFERVAL-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475] ==
−
* direction:
+
* taxonomic range:
−
** REVERSIBLE
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2763 TAX-2763]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
−
** branched-chain_amino_acid_aminotransferase
+
** trans-lycopene biosynthesis II (plants)
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/2.6.1.42 EC-2.6.1.42]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''8''' reactions found over '''8''' reactions in the full pathway
−
** 1 [[VAL]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[GLT]][c]
+
* [[2.5.1.32-RXN]]
−
* With common name(s):
+
** 1 associated gene(s):
−
** 1 L-valine[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 3-methyl-2-oxobutanoate[c] '''+''' 1 L-glutamate[c]
+
*** [[Tiso_gene_15914]]
−
 
+
** 2 reconstruction source(s) associated:
−
== Genes associated with this reaction  ==
+
*** [[orthology-synechocystis]]
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[orthology-esiliculosus]]
−
* [[Tiso_gene_18403]]
+
* [[RXN-11354]]
−
** [[pantograph]]-[[synechocystis]]
+
** 0 associated gene:
−
* [[Tiso_gene_14984]]
+
** 1 reconstruction source(s) associated:
−
** IN-SILICO_ANNOTATION
+
*** [[manual-reactions_pwy-6475_tiso_add]]
−
***EC-NUMBER
+
* [[RXN-11356]]
−
** EXPERIMENTAL_ANNOTATION
+
** 1 associated gene(s):
−
***EC-NUMBER
+
*** [[Tiso_gene_7142]]
−
** [[pantograph]]-[[synechocystis]]
+
** 1 reconstruction source(s) associated:
−
** [[pantograph]]-[[esiliculosus]]
+
*** [[orthology-esiliculosus]]
−
== Pathways  ==
+
* [[RXN-11357]]
−
* [[VALSYN-PWY]], L-valine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=VALSYN-PWY VALSYN-PWY]
+
** 1 associated gene(s):
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
*** [[Tiso_gene_7142]]
−
* [[VALDEG-PWY]], L-valine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=VALDEG-PWY VALDEG-PWY]
+
** 1 reconstruction source(s) associated:
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
*** [[orthology-esiliculosus]]
−
* [[ALANINE-VALINESYN-PWY]], L-alanine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=ALANINE-VALINESYN-PWY ALANINE-VALINESYN-PWY]
+
* [[RXN-12243]]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** 0 associated gene:
−
* [[PWY-5057]], L-valine degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5057 PWY-5057]
+
** 1 reconstruction source(s) associated:
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
*** [[manual-reactions_pwy-6475_tiso_add]]
−
== Reconstruction information  ==
+
* [[RXN-12244]]
−
* [[orthology]]:
+
** 0 associated gene:
−
** [[pantograph]]:
+
** 1 reconstruction source(s) associated:
−
*** [[synechocystis]]
+
*** [[manual-reactions_pwy-6475_tiso_add]]
−
*** [[esiliculosus]]
+
* [[RXN-8042]]
−
* [[manual]]:
+
** 6 associated gene(s):
−
** [[primary_network]]
+
*** [[Tiso_gene_13369]]
−
* [[annotation]]:
+
*** [[Tiso_gene_13367]]
−
** [[pathwaytools]]:
+
*** [[Tiso_gene_917]]
−
*** [[experimental_annotation]]
+
*** [[Tiso_gene_916]]
−
*** [[in-silico_annotation]]
+
*** [[Tiso_gene_15802]]
 +
*** [[Tiso_gene_915]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
* [[RXNARA-8002]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_15914]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-esiliculosus]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* PLANTCYC : PWY-6475
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24813 24813]
+
{{#set: taxonomic range=TAX-1117}}
−
* LIGAND-RXN:
+
{{#set: taxonomic range=TAX-2763}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01214 R01214]
+
{{#set: taxonomic range=TAX-33090}}
−
* UNIPROT:
+
{{#set: common name=trans-lycopene biosynthesis II (plants)}}
−
** [http://www.uniprot.org/uniprot/Q9PIM6 Q9PIM6]
+
{{#set: reaction found=8}}
−
** [http://www.uniprot.org/uniprot/P38891 P38891]
+
{{#set: total reaction=8}}
−
** [http://www.uniprot.org/uniprot/P47176 P47176]
+
{{#set: completion rate=100.0}}
−
** [http://www.uniprot.org/uniprot/O86505 O86505]
+
−
** [http://www.uniprot.org/uniprot/O14370 O14370]
+
−
** [http://www.uniprot.org/uniprot/O32954 O32954]
+
−
** [http://www.uniprot.org/uniprot/P0AB80 P0AB80]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=branched-chain_amino_acid_aminotransferase}}
+
−
{{#set: ec number=EC-2.6.1.42}}
+
−
{{#set: gene associated=Tiso_gene_18403|Tiso_gene_14984}}
+
−
{{#set: in pathway=VALSYN-PWY|VALDEG-PWY|ALANINE-VALINESYN-PWY|PWY-5057}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=synechocystis|esiliculosus}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 20:04, 21 March 2018

Pathway PWY-6475

Reaction(s) found

8 reactions found over 8 reactions in the full pathway

Reaction(s) not found

External links

  • PLANTCYC : PWY-6475




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6475&oldid=39292"