Difference between revisions of "PWY-6475"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BRANCHED-CHAINAMINOTRANSFERVAL-RXN BRANCHED-CHAINAMINOTRANSFERVAL-RXN] == * direction: ** REVERSIBL...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-11...")
 
(4 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BRANCHED-CHAINAMINOTRANSFERVAL-RXN BRANCHED-CHAINAMINOTRANSFERVAL-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2763 TAX-2763]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
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** branched-chain_amino_acid_aminotransferase
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** trans-lycopene biosynthesis II (plants)
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* ec number:
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** [http://enzyme.expasy.org/EC/2.6.1.42 EC-2.6.1.42]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''8''' reactions found over '''8''' reactions in the full pathway
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** 1 [[VAL]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[GLT]][c]
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* [[2.5.1.32-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 L-valine[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 3-methyl-2-oxobutanoate[c] '''+''' 1 L-glutamate[c]
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*** [[Tiso_gene_15914]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-synechocystis]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-esiliculosus]]
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* [[Tiso_gene_18403]]
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* [[RXN-11354]]
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** [[pantograph]]-[[synechocystis]]
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** 0 associated gene:
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* [[Tiso_gene_14984]]
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** 1 reconstruction source(s) associated:
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** IN-SILICO_ANNOTATION
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*** [[manual-reactions_pwy-6475_tiso_add]]
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***EC-NUMBER
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* [[RXN-11356]]
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** EXPERIMENTAL_ANNOTATION
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** 1 associated gene(s):
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***EC-NUMBER
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*** [[Tiso_gene_7142]]
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** [[pantograph]]-[[synechocystis]]
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** 1 reconstruction source(s) associated:
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** [[pantograph]]-[[esiliculosus]]
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*** [[orthology-esiliculosus]]
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== Pathways  ==
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* [[RXN-11357]]
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* [[VALSYN-PWY]], L-valine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=VALSYN-PWY VALSYN-PWY]
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** 1 associated gene(s):
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** '''4''' reactions found over '''4''' reactions in the full pathway
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*** [[Tiso_gene_7142]]
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* [[VALDEG-PWY]], L-valine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=VALDEG-PWY VALDEG-PWY]
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** 1 reconstruction source(s) associated:
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** '''8''' reactions found over '''8''' reactions in the full pathway
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*** [[orthology-esiliculosus]]
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* [[ALANINE-VALINESYN-PWY]], L-alanine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=ALANINE-VALINESYN-PWY ALANINE-VALINESYN-PWY]
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* [[RXN-12243]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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** 0 associated gene:
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* [[PWY-5057]], L-valine degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5057 PWY-5057]
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** 1 reconstruction source(s) associated:
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** '''2''' reactions found over '''3''' reactions in the full pathway
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*** [[manual-reactions_pwy-6475_tiso_add]]
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== Reconstruction information  ==
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* [[RXN-12244]]
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* [[orthology]]:
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** 0 associated gene:
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** [[pantograph]]:
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** 1 reconstruction source(s) associated:
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*** [[synechocystis]]
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*** [[manual-reactions_pwy-6475_tiso_add]]
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*** [[esiliculosus]]
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* [[RXN-8042]]
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* [[manual]]:
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** 6 associated gene(s):
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** [[primary_network]]
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*** [[Tiso_gene_13369]]
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* [[annotation]]:
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*** [[Tiso_gene_13367]]
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** [[pathwaytools]]:
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*** [[Tiso_gene_917]]
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*** [[experimental_annotation]]
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*** [[Tiso_gene_916]]
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*** [[in-silico_annotation]]
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*** [[Tiso_gene_15802]]
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*** [[Tiso_gene_915]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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* [[RXNARA-8002]]
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** 1 associated gene(s):
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*** [[Tiso_gene_15914]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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* PLANTCYC : PWY-6475
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24813 24813]
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{{#set: taxonomic range=TAX-1117}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2763}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01214 R01214]
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{{#set: taxonomic range=TAX-33090}}
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* UNIPROT:
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{{#set: common name=trans-lycopene biosynthesis II (plants)}}
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** [http://www.uniprot.org/uniprot/Q9PIM6 Q9PIM6]
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{{#set: reaction found=8}}
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** [http://www.uniprot.org/uniprot/P38891 P38891]
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{{#set: total reaction=8}}
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** [http://www.uniprot.org/uniprot/P47176 P47176]
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/O86505 O86505]
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** [http://www.uniprot.org/uniprot/O14370 O14370]
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** [http://www.uniprot.org/uniprot/O32954 O32954]
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** [http://www.uniprot.org/uniprot/P0AB80 P0AB80]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=branched-chain_amino_acid_aminotransferase}}
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{{#set: ec number=EC-2.6.1.42}}
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{{#set: gene associated=Tiso_gene_18403|Tiso_gene_14984}}
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{{#set: in pathway=VALSYN-PWY|VALDEG-PWY|ALANINE-VALINESYN-PWY|PWY-5057}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:04, 21 March 2018

Pathway PWY-6475

Reaction(s) found

8 reactions found over 8 reactions in the full pathway

Reaction(s) not found

External links

  • PLANTCYC : PWY-6475




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