Difference between revisions of "HEMESYN2-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FADSYN-RXN FADSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** fad_synthetase * ec numbe...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-475...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FADSYN-RXN FADSYN-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33630 TAX-33630]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** fad_synthetase
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** heme biosynthesis II (anaerobic)
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.7.2 EC-2.7.7.2]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''3''' reactions found over '''4''' reactions in the full pathway
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** 1 [[FMN]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[FAD]][c] '''+''' 1 [[PPI]][c]
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* [[HEMN-RXN]]
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* With common name(s):
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** 5 associated gene(s):
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** 1 FMN[c] '''+''' 1 H+[c] '''+''' 1 ATP[c] '''=>''' 1 FAD[c] '''+''' 1 diphosphate[c]
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*** [[Tiso_gene_5577]]
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*** [[Tiso_gene_18066]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_13365]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_13364]]
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* [[Tiso_gene_5393]]
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*** [[Tiso_gene_4004]]
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** IN-SILICO_ANNOTATION
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** 4 reconstruction source(s) associated:
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***AUTOMATED-NAME-MATCH
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*** [[orthology-athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[creinhardtii]]
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*** [[orthology-synechocystis]]
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* [[Tiso_gene_5392]]
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*** [[orthology-esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[PROTOHEMEFERROCHELAT-RXN]]
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* [[Tiso_gene_7479]]
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** 2 associated gene(s):
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** [[pantograph]]-[[synechocystis]]
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*** [[Tiso_gene_3284]]
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* [[Tiso_gene_1086]]
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*** [[Tiso_gene_15900]]
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** [[pantograph]]-[[synechocystis]]
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** 6 reconstruction source(s) associated:
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== Pathways  ==
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*** [[annotation-experimental_annotation]]
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* [[PWY66-366]], flavin biosynthesis IV (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-366 PWY66-366]
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*** [[orthology-esiliculosus]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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*** [[annotation-in-silico_annotation]]
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* [[PWY-6167]], flavin biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6167 PWY-6167]
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*** [[orthology-athaliana]]
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** '''4''' reactions found over '''10''' reactions in the full pathway
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*** [[orthology-synechocystis]]
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* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
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*** [[orthology-creinhardtii]]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[UROGENDECARBOX-RXN]]
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* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
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** 4 associated gene(s):
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** '''7''' reactions found over '''9''' reactions in the full pathway
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*** [[Tiso_gene_18743]]
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== Reconstruction information  ==
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*** [[Tiso_gene_19684]]
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* Category: [[orthology]]
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*** [[Tiso_gene_18744]]
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** Source: [[orthology-creinhardtii]]
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*** [[Tiso_gene_5173]]
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*** Tool: [[pantograph]]
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** 6 reconstruction source(s) associated:
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** Source: [[orthology-synechocystis]]
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*** [[annotation-experimental_annotation]]
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*** Tool: [[pantograph]]
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*** [[orthology-esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** Tool: [[pantograph]]
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*** [[orthology-synechocystis]]
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* Category: [[annotation]]
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*** [[manual-primary_network]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-creinhardtii]]
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*** Tool: [[pathwaytools]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN0-6259 RXN0-6259]
 
== External links  ==
 
== External links  ==
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* RHEA:
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* ECOCYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17237 17237]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-4751}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00161 R00161]
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{{#set: taxonomic range=TAX-33630}}
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* UNIPROT:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.uniprot.org/uniprot/Q9JVY5 Q9JVY5]
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{{#set: common name=heme biosynthesis II (anaerobic)}}
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** [http://www.uniprot.org/uniprot/Q9PHS7 Q9PHS7]
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{{#set: reaction found=3}}
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** [http://www.uniprot.org/uniprot/Q59263 Q59263]
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{{#set: total reaction=4}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: completion rate=75.0}}
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{{#set: common name=fad_synthetase}}
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{{#set: ec number=EC-2.7.7.2}}
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{{#set: gene associated=Tiso_gene_5393|Tiso_gene_5392|Tiso_gene_7479|Tiso_gene_1086}}
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{{#set: in pathway=PWY66-366|PWY-6167|PWY-6168|RIBOSYN2-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-creinhardtii|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:04, 21 March 2018

Pathway HEMESYN2-PWY

Reaction(s) found

3 reactions found over 4 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=HEMESYN2-PWY&oldid=39310"