Difference between revisions of "PWY-5913"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14131 RXN-14131] == * direction: ** LEFT-TO-RIGHT * common name: ** acyl-coenzyme_a_oxidase **...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1118 TAX-11...")
 
(4 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14131 RXN-14131] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1118 TAX-1118]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1217 TAX-1217]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
 
* common name:
 
* common name:
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** acyl-coenzyme_a_oxidase
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** partial TCA cycle (obligate autotrophs)
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** acyl-_dehydrogenase
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−
** ORF
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** acyl-CoA_dehydrogenase
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* ec number:
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** [http://enzyme.expasy.org/EC/1.3.8.8 EC-1.3.8.8]
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* Synonym(s):
 
* Synonym(s):
 +
** TCA cycle VI (obligate autotrophs)
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''9''' reactions found over '''11''' reactions in the full pathway
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** 1 [[ETF-Oxidized]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[TETRADECANOYL-COA]][c] '''=>''' 1 [[CPD-15568]][c] '''+''' 1 [[ETF-Reduced]][c]
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* [[ACONITATEDEHYDR-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 an oxidized electron-transfer flavoprotein[c] '''+''' 1 H+[c] '''+''' 1 myristoyl-CoA[c] '''=>''' 1 2-trans-tetradecenoyl-CoA[c] '''+''' 1 a reduced electron-transfer flavoprotein[c]
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*** [[Tiso_gene_13007]]
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** 3 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_5991]]
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*** [[orthology-synechocystis]]
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** IN-SILICO_ANNOTATION
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* [[ACONITATEHYDR-RXN]]
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***EC-NUMBER
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** 1 associated gene(s):
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* [[Tiso_gene_16631]]
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*** [[Tiso_gene_13007]]
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** IN-SILICO_ANNOTATION
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** 2 reconstruction source(s) associated:
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***EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_6475]]
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*** [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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* [[ASPAMINOTRANS-RXN]]
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***EC-NUMBER
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** 6 associated gene(s):
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* [[Tiso_gene_17967]]
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*** [[Tiso_gene_17718]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_6815]]
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***EC-NUMBER
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*** [[Tiso_gene_13538]]
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* [[Tiso_gene_18566]]
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*** [[Tiso_gene_15680]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_17809]]
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***EC-NUMBER
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*** [[Tiso_gene_12889]]
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* [[Tiso_gene_883]]
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** 7 reconstruction source(s) associated:
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** EXPERIMENTAL_ANNOTATION
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*** [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** [[orthology-esiliculosus]]
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== Pathways  ==
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*** [[annotation-in-silico_annotation]]
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* [[PWY-7654]], (8E,10E)-dodeca-8,10-dienol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7654 PWY-7654]
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*** [[orthology-athaliana]]
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** '''6''' reactions found over '''11''' reactions in the full pathway
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*** [[orthology-synechocystis]]
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== Reconstruction information  ==
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*** [[manual-primary_network]]
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* [[annotation]]:
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*** [[orthology-creinhardtii]]
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** [[pathwaytools]]:
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* [[CITSYN-RXN]]
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*** [[experimental_annotation]]
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** 4 associated gene(s):
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*** [[in-silico_annotation]]
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*** [[Tiso_gene_18030]]
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*** [[Tiso_gene_9601]]
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*** [[Tiso_gene_9603]]
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*** [[Tiso_gene_9602]]
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** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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* [[FUMHYDR-RXN]]
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** 2 associated gene(s):
 +
*** [[Tiso_gene_3691]]
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*** [[Tiso_gene_6720]]
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** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[GLUTDEHYD-RXN]]
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** 3 associated gene(s):
 +
*** [[Tiso_gene_2581]]
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*** [[Tiso_gene_1154]]
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*** [[Tiso_gene_11511]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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* [[ISOCITDEH-RXN]]
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** 2 associated gene(s):
 +
*** [[Tiso_gene_18262]]
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*** [[Tiso_gene_10809]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[MALATE-DEH-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_2323]]
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*** [[Tiso_gene_1990]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[SUCCCOASYN-RXN]]
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** 2 associated gene(s):
 +
*** [[Tiso_gene_15846]]
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*** [[Tiso_gene_11866]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14970 RXN-14970]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-1118}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28359 28359]
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{{#set: taxonomic range=TAX-1217}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-1224}}
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{{#set: common name=acyl-coenzyme_a_oxidase}}
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{{#set: common name=partial TCA cycle (obligate autotrophs)}}
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{{#set: common name=acyl-_dehydrogenase}}
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{{#set: common name=TCA cycle VI (obligate autotrophs)}}
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{{#set: common name=ORF}}
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{{#set: reaction found=9}}
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{{#set: common name=acyl-CoA_dehydrogenase}}
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{{#set: total reaction=11}}
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{{#set: ec number=EC-1.3.8.8}}
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{{#set: completion rate=82.0}}
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{{#set: gene associated=Tiso_gene_5991|Tiso_gene_16631|Tiso_gene_6475|Tiso_gene_17967|Tiso_gene_18566|Tiso_gene_883}}
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{{#set: in pathway=PWY-7654}}
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−
{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:05, 21 March 2018

Pathway PWY-5913

  • taxonomic range:
  • common name:
    • partial TCA cycle (obligate autotrophs)
  • Synonym(s):
    • TCA cycle VI (obligate autotrophs)

Reaction(s) found

9 reactions found over 11 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5913&oldid=39392"