Difference between revisions of "Tiso gene 13144"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11245 RXN-11245] == * direction: ** LEFT-TO-RIGHT * common name: ** hydroxyacyl-coenzyme_a_dehy...")
(Created page with "Category:Gene == Gene Tiso_gene_13144 == * right end position: ** 6355 * transcription direction: ** POSITIVE * left end position: ** 4873 * centisome position: ** 74.9923...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11245 RXN-11245] ==
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== Gene Tiso_gene_13144 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 6355
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* common name:
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* transcription direction:
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** hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit
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** POSITIVE
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** 3-hydroxyacyl-_dehydrogenase
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* left end position:
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** hydroxyacyl-coenzyme_a_mitochondrial
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** 4873
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/1.1.1.35 EC-1.1.1.35]
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** 74.9923   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ACETYLGLUTKIN-RXN]]
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** 1 [[CPD-12199]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[CPD-10600]][c] '''+''' 1 [[PROTON]][c]
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* With common name(s):
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** 1 3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA[c] '''+''' 1 NAD+[c] '''=>''' 1 NADH[c] '''+''' 1 4-hydroxybenzoyl-acetyl-CoA[c] '''+''' 1 H+[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_18838]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: automated-name-match
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* Gene: [[Tiso_gene_14262]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: automated-name-match
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* Gene: [[Tiso_gene_5857]]
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** Source: [[orthology-athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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** Source: [[orthology-synechocystis]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_14026]]
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* Reaction: [[AGK]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[RXN-15005]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: automated-name-match
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: automated-name-match
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_14027]]
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== Pathways associated ==
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** Source: [[orthology-esiliculosus]]
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* [[PWY-5154]]
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* Gene: [[Tiso_gene_18839]]
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* [[GLUTORN-PWY]]
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** Source: [[annotation-in-silico_annotation]]
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* [[ARGSYNBSUB-PWY]]
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*** Assignment: EC-NUMBER
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* [[PWY-7400]]
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== Pathways ==
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* [[PWY-6435]], 4-hydroxybenzoate biosynthesis V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6435 PWY-6435]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=6355}}
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{{#set: common name=hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=3-hydroxyacyl-_dehydrogenase}}
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{{#set: left end position=4873}}
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{{#set: common name=hydroxyacyl-coenzyme_a_mitochondrial}}
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{{#set: centisome position=74.9923    }}
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{{#set: ec number=EC-1.1.1.35}}
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{{#set: reaction associated=ACETYLGLUTKIN-RXN|AGK|RXN-15005}}
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{{#set: gene associated=Tiso_gene_18838|Tiso_gene_14262|Tiso_gene_5857|Tiso_gene_14026|Tiso_gene_14027|Tiso_gene_18839}}
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{{#set: pathway associated=PWY-5154|GLUTORN-PWY|ARGSYNBSUB-PWY|PWY-7400}}
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{{#set: in pathway=PWY-6435}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:06, 21 March 2018

Gene Tiso_gene_13144

  • right end position:
    • 6355
  • transcription direction:
    • POSITIVE
  • left end position:
    • 4873
  • centisome position:
    • 74.9923
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_13144&oldid=39520"