Difference between revisions of "RXN-11245"

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(Created page with "Category:Gene == Gene Tiso_gene_348 == * left end position: ** 30916 * transcription direction: ** POSITIVE * right end position: ** 34578 * centisome position: ** 87.8994...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11245 RXN-11245] == * direction: ** LEFT-TO-RIGHT * common name: ** hydroxyacyl-coenzyme_a_dehy...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_348 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11245 RXN-11245] ==
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* left end position:
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* direction:
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** 30916
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit
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* right end position:
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** 3-hydroxyacyl-_dehydrogenase
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** 34578
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** hydroxyacyl-coenzyme_a_mitochondrial
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* centisome position:
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* ec number:
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** 87.89947   
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** [http://enzyme.expasy.org/EC/1.1.1.35 EC-1.1.1.35]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[ACYLCOASYN-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[CPD-12199]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[CPD-10600]][c] '''+''' 1 [[PROTON]][c]
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***ec-number
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* With common name(s):
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** experimental_annotation
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** 1 3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA[c] '''+''' 1 NAD+[c] '''=>''' 1 NADH[c] '''+''' 1 4-hydroxybenzoyl-acetyl-CoA[c] '''+''' 1 H+[c]
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***ec-number
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* [[LINOLENOYL-RXN]]
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== Genes associated with this reaction  ==
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** in-silico_annotation
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Genes have been associated with this reaction based on different elements listed below.
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***ec-number
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* Gene: [[Tiso_gene_18838]]
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** experimental_annotation
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** Source: [[annotation-in-silico_annotation]]
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***ec-number
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*** Assignment: EC-NUMBER
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* [[R223-RXN]]
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* Gene: [[Tiso_gene_14262]]
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** in-silico_annotation
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** Source: [[annotation-in-silico_annotation]]
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***ec-number
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*** Assignment: EC-NUMBER
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** experimental_annotation
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** Source: [[annotation-experimental_annotation]]
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***ec-number
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*** Assignment: EC-NUMBER
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* [[RXN-12184]]
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* Gene: [[Tiso_gene_5857]]
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** in-silico_annotation
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** Source: [[annotation-in-silico_annotation]]
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***ec-number
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*** Assignment: EC-NUMBER
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** experimental_annotation
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** Source: [[annotation-experimental_annotation]]
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***ec-number
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*** Assignment: EC-NUMBER
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* [[RXN-12978]]
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** Source: [[orthology-esiliculosus]]
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** in-silico_annotation
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* Gene: [[Tiso_gene_14026]]
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***ec-number
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** Source: [[annotation-in-silico_annotation]]
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** experimental_annotation
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*** Assignment: EC-NUMBER
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***ec-number
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** Source: [[annotation-experimental_annotation]]
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* [[RXN-13290]]
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*** Assignment: EC-NUMBER
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** in-silico_annotation
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** Source: [[orthology-esiliculosus]]
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***ec-number
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* Gene: [[Tiso_gene_14027]]
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** experimental_annotation
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** Source: [[orthology-esiliculosus]]
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***ec-number
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* Gene: [[Tiso_gene_18839]]
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* [[RXN-13614]]
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** Source: [[annotation-in-silico_annotation]]
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** in-silico_annotation
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*** Assignment: EC-NUMBER
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***ec-number
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== Pathways ==
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** experimental_annotation
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* [[PWY-6435]], 4-hydroxybenzoate biosynthesis V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6435 PWY-6435]
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***ec-number
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[RXN-16380]]
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== Reconstruction information  ==
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** in-silico_annotation
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* Category: [[orthology]]
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***ec-number
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** Source: [[orthology-esiliculosus]]
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** experimental_annotation
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*** Tool: [[pantograph]]
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***ec-number
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* Category: [[annotation]]
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* [[RXN-16389]]
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** Source: [[annotation-in-silico_annotation]]
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** in-silico_annotation
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*** Tool: [[pathwaytools]]
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***ec-number
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** Source: [[annotation-experimental_annotation]]
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** experimental_annotation
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*** Tool: [[pathwaytools]]
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***ec-number
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* [[RXN-16393]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-16401]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-16402]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-16415]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-16418]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-7904]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-9623]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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** [[pantograph]]-[[athaliana]]
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* [[RXN-9644]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-9673]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN0-7238]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN0-7239]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN0-7248]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN66-469]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN66-477]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN66-480]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN66-483]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN66-484]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[TRANS-RXN0-623]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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== Pathways associated ==
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* [[PWY-6920]]
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* [[P221-PWY]]
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* [[PWY-321]]
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* [[PWY-5972]]
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* [[PWY-5971]]
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* [[PWY-7033]]
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* [[PWY-5136]]
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* [[PWY66-389]]
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* [[PWY-7288]]
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* [[PWY-6733]]
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* [[PWY-7094]]
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* [[PWY66-391]]
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* [[FAO-PWY]]
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* [[PWY-1121]]
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* [[PWY-6873]]
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* [[PWY-5147]]
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* [[PWY-5143]]
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* [[PWY-5885]]
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* [[PWY-7724]]
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* [[PWY-6001]]
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* [[PWY-6000]]
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* [[PWY-7049]]
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* [[PWY66-387]]
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−
* [[PWY-5989]]
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−
* [[PWY-6803]]
+
−
* [[PWY66-388]]
+
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=30916}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: transcription direction=POSITIVE}}
+
{{#set: common name=hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit}}
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{{#set: right end position=34578}}
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{{#set: common name=3-hydroxyacyl-_dehydrogenase}}
−
{{#set: centisome position=87.89947    }}
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{{#set: common name=hydroxyacyl-coenzyme_a_mitochondrial}}
−
{{#set: reaction associated=ACYLCOASYN-RXN|LINOLENOYL-RXN|R223-RXN|RXN-12184|RXN-12978|RXN-13290|RXN-13614|RXN-16380|RXN-16389|RXN-16393|RXN-16401|RXN-16402|RXN-16415|RXN-16418|RXN-7904|RXN-9623|RXN-9644|RXN-9673|RXN0-7238|RXN0-7239|RXN0-7248|RXN66-469|RXN66-477|RXN66-480|RXN66-483|RXN66-484|TRANS-RXN0-623}}
+
{{#set: ec number=EC-1.1.1.35}}
−
{{#set: pathway associated=PWY-6920|P221-PWY|PWY-321|PWY-5972|PWY-5971|PWY-7033|PWY-5136|PWY66-389|PWY-7288|PWY-6733|PWY-7094|PWY66-391|FAO-PWY|PWY-1121|PWY-6873|PWY-5147|PWY-5143|PWY-5885|PWY-7724|PWY-6001|PWY-6000|PWY-7049|PWY66-387|PWY-5989|PWY-6803|PWY66-388}}
+
{{#set: gene associated=Tiso_gene_18838|Tiso_gene_14262|Tiso_gene_5857|Tiso_gene_14026|Tiso_gene_14027|Tiso_gene_18839}}
 +
{{#set: in pathway=PWY-6435}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:06, 21 March 2018

Reaction RXN-11245

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit
    • 3-hydroxyacyl-_dehydrogenase
    • hydroxyacyl-coenzyme_a_mitochondrial
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA[c] + 1 NAD+[c] => 1 NADH[c] + 1 4-hydroxybenzoyl-acetyl-CoA[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6435, 4-hydroxybenzoate biosynthesis V: PWY-6435
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-11245&oldid=39523"