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| − | [[Category:Reaction]] | + | [[Category:Pathway]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.39-RXN 1.1.1.39-RXN] == | + | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7417 PWY-7417] == |
| − | * direction: | + | * taxonomic range: |
| − | ** LEFT-TO-RIGHT | + | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759] |
| | * common name: | | * common name: |
| − | ** mitochondrial_malic_enzyme | + | ** phospholipid remodeling (phosphatidate, yeast) |
| − | ** ORF
| + | |
| − | * ec number:
| + | |
| − | ** [http://enzyme.expasy.org/EC/1.1.1.38 EC-1.1.1.38]
| + | |
| − | ** [http://enzyme.expasy.org/EC/1.1.1.39 EC-1.1.1.39]
| + | |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction Formula == | + | == Reaction(s) found == |
| − | * With identifiers:
| + | '''2''' reactions found over '''2''' reactions in the full pathway |
| − | ** 1 [[MAL]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[PYRUVATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c]
| + | * [[RXN-15043]] |
| − | * With common name(s):
| + | ** 1 associated gene(s): |
| − | ** 1 (S)-malate[c] '''+''' 1 NAD+[c] '''=>''' 1 pyruvate[c] '''+''' 1 CO2[c] '''+''' 1 NADH[c] | + | *** [[Tiso_gene_13959]] |
| − | | + | ** 3 reconstruction source(s) associated: |
| − | == Genes associated with this reaction ==
| + | *** [[annotation-experimental_annotation]] |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | *** [[annotation-in-silico_annotation]] |
| − | * Gene: [[Tiso_gene_12896]]
| + | *** [[orthology-esiliculosus]] |
| − | ** Source: [[orthology-esiliculosus]] | + | * [[RXN-15068]] |
| − | * Gene: [[Tiso_gene_6675]] | + | ** 4 associated gene(s): |
| − | ** Source: [[annotation-in-silico_annotation]] | + | *** [[Tiso_gene_15047]] |
| − | *** Assignment: EC-NUMBER | + | *** [[Tiso_gene_12960]] |
| − | ** Source: [[annotation-experimental_annotation]]
| + | *** [[Tiso_gene_15046]] |
| − | *** Assignment: EC-NUMBER | + | *** [[Tiso_gene_12959]] |
| − | * Gene: [[Tiso_gene_12200]]
| + | ** 2 reconstruction source(s) associated: |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | *** [[annotation-experimental_annotation]] |
| − | *** Assignment: EC-NUMBER | + | *** [[annotation-in-silico_annotation]] |
| − | ** Source: [[annotation-experimental_annotation]]
| + | == Reaction(s) not found == |
| − | *** Assignment: EC-NUMBER
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | == Pathways ==
| + | |
| − | * [[PWY-3641]], L-carnitine degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3641 PWY-3641] | + | |
| − | ** '''2''' reactions found over '''3''' reactions in the full pathway | + | |
| − | * [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
| + | |
| − | ** '''13''' reactions found over '''13''' reactions in the full pathway
| + | |
| − | * [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384]
| + | |
| − | ** '''7''' reactions found over '''12''' reactions in the full pathway | + | |
| − | * [[PWY-7686]], L-malate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7686 PWY-7686] | + | |
| − | ** '''1''' reactions found over '''1''' reactions in the full pathway | + | |
| − | * [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115] | + | |
| − | ** '''7''' reactions found over '''9''' reactions in the full pathway | + | |
| − | * [[PWY-7118]], chitin degradation to ethanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7118 PWY-7118] | + | |
| − | ** '''4''' reactions found over '''6''' reactions in the full pathway | + | |
| − | == Reconstruction information ==
| + | |
| − | * Category: [[orthology]] | + | |
| − | ** Source: [[orthology-esiliculosus]] | + | |
| − | *** Tool: [[pantograph]] | + | |
| − | * Category: [[annotation]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]] | + | |
| − | *** Tool: [[pathwaytools]]
| + | |
| − | ** Source: [[annotation-experimental_annotation]]
| + | |
| − | *** Tool: [[pathwaytools]]
| + | |
| | == External links == | | == External links == |
| − | * RHEA:
| + | {{#set: taxonomic range=TAX-2759}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12653 12653]
| + | {{#set: common name=phospholipid remodeling (phosphatidate, yeast)}} |
| − | * LIGAND-RXN:
| + | {{#set: reaction found=2}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R00214 R00214]
| + | {{#set: total reaction=2}} |
| − | * UNIPROT:
| + | {{#set: completion rate=100.0}} |
| − | ** [http://www.uniprot.org/uniprot/Q48662 Q48662]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9PN12 Q9PN12]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O59029 O59029]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P16468 P16468]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9CGB2 Q9CGB2]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P26616 P26616]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9JVE6 Q9JVE6]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P37224 P37224]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P37225 P37225]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P37221 P37221]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q7M1T9 Q7M1T9]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9M162 Q9M162]
| + | |
| − | {{#set: direction=LEFT-TO-RIGHT}} | + | |
| − | {{#set: common name=mitochondrial_malic_enzyme}} | + | |
| − | {{#set: common name=ORF}} | + | |
| − | {{#set: ec number=EC-1.1.1.38}} | + | |
| − | {{#set: ec number=EC-1.1.1.39}} | + | |
| − | {{#set: gene associated=Tiso_gene_12896|Tiso_gene_6675|Tiso_gene_12200}}
| + | |
| − | {{#set: in pathway=PWY-3641|GLUCONEO-PWY|PWY-7384|PWY-7686|PWY-7115|PWY-7118}}
| + | |
| − | {{#set: reconstruction category=orthology|annotation}}
| + | |
| − | {{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
| + | |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}}
| + | |
