Difference between revisions of "TRPCAT-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.1.148-RXN 2.7.1.148-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 4-diphosphocytidyl-...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=TRPCAT-PWY TRPCAT-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.1.148-RXN 2.7.1.148-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=TRPCAT-PWY TRPCAT-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** 4-diphosphocytidyl-2-c-methyl-d-erythritol_kinase
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** L-tryptophan degradation I (via anthranilate)
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.1.148 EC-2.7.1.148]
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* Synonym(s):
 
* Synonym(s):
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** anthranilate pathway
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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  '''2''' reactions found over '''3''' reactions in the full pathway
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** 1 [[ATP]][c] '''+''' 1 [[4-CYTIDINE-5-DIPHOSPHO-2-C]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[2-PHOSPHO-4-CYTIDINE-5-DIPHOSPHO-2-C-MET]][c] '''+''' 1 [[ADP]][c]
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* [[ARYLFORMAMIDASE-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 ATP[c] '''+''' 1 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol[c] '''=>''' 1 H+[c] '''+''' 1 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol[c] '''+''' 1 ADP[c]
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*** [[Tiso_gene_16921]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-creinhardtii]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[KYNURENINASE-RXN]]
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* [[Tiso_gene_13463]]
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** 2 associated gene(s):
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_10685]]
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***EC-NUMBER
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*** [[Tiso_gene_10684]]
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** EXPERIMENTAL_ANNOTATION
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** 1 reconstruction source(s) associated:
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***EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[athaliana]]
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== Reaction(s) not found ==
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** [[pantograph]]-[[synechocystis]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8665 RXN-8665]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways ==
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* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18437 18437]
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{{#set: common name=L-tryptophan degradation I (via anthranilate)}}
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* LIGAND-RXN:
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{{#set: common name=anthranilate pathway}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05634 R05634]
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{{#set: reaction found=2}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: total reaction=3}}
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{{#set: common name=4-diphosphocytidyl-2-c-methyl-d-erythritol_kinase}}
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{{#set: completion rate=67.0}}
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{{#set: ec number=EC-2.7.1.148}}
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{{#set: gene associated=Tiso_gene_13463}}
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{{#set: in pathway=NONMEVIPP-PWY|PWY-7560}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:07, 21 March 2018

Pathway TRPCAT-PWY

  • taxonomic range:
  • common name:
    • L-tryptophan degradation I (via anthranilate)
  • Synonym(s):
    • anthranilate pathway

Reaction(s) found

2 reactions found over 3 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=TRPCAT-PWY&oldid=39606"