Difference between revisions of "RXN-13290"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=APIGNAR-RXN APIGNAR-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Naringenin chalcone iso...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13290 RXN-13290] == * direction: ** LEFT-TO-RIGHT * common name: ** 15-tetracosenoate—CoA...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=APIGNAR-RXN APIGNAR-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13290 RXN-13290] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Naringenin chalcone isomerase
+
** 15-tetracosenoate—CoA ligase
−
** atp-dependent_rna_helicase_dhx30-like
+
** polyketide_synthase
 +
** long_chain_acyl-_synthetase
 +
** acyl-_synthetase
 +
** ORF
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/5.5.1.6 EC-5.5.1.6]
+
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[APIGENIN]][c] '''=>''' 1 [[NARINGENIN-CMPD]][c]
+
** 1 [[CO-A]][c] '''+''' 1 [[CPD-14268]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-14269]][c] '''+''' 1 [[AMP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 2',4,4',6'-tetrahydroxychalcone[c] '''=>''' 1 (2S)-naringenin[c]
+
** 1 coenzyme A[c] '''+''' 1 (15Z)-tetracosenoate[c] '''+''' 1 ATP[c] '''=>''' 1 diphosphate[c] '''+''' 1 (Z)-15-tetracosenoyl-CoA[c] '''+''' 1 AMP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_9838]]
+
* Gene: [[Tiso_gene_10876]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_13414]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_135]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7855]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_348]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_500]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9394]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_13394]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4191]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_136]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7397]], naringenin biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7397 PWY-7397]
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY1F-FLAVSYN]], flavonoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6787]], flavonoid biosynthesis (in equisetum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6787 PWY-6787]
 
−
** '''5''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R02446 R02446]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P11650 P11650]
 
−
** [http://www.uniprot.org/uniprot/P11651 P11651]
 
−
** [http://www.uniprot.org/uniprot/P41088 P41088]
 
−
** [http://www.uniprot.org/uniprot/P14298 P14298]
 
−
** [http://www.uniprot.org/uniprot/Q42925 Q42925]
 
−
** [http://www.uniprot.org/uniprot/Q42926 Q42926]
 
−
** [http://www.uniprot.org/uniprot/Q08704 Q08704]
 
−
** [http://www.uniprot.org/uniprot/P28012 P28012]
 
−
** [http://www.uniprot.org/uniprot/P41089 P41089]
 
−
** [http://www.uniprot.org/uniprot/O81980 O81980]
 
−
** [http://www.uniprot.org/uniprot/O22604 O22604]
 
−
** [http://www.uniprot.org/uniprot/O22651 O22651]
 
−
** [http://www.uniprot.org/uniprot/Q43754 Q43754]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Naringenin chalcone isomerase}}
+
{{#set: common name=15-tetracosenoate—CoA ligase}}
−
{{#set: common name=atp-dependent_rna_helicase_dhx30-like}}
+
{{#set: common name=polyketide_synthase}}
−
{{#set: ec number=EC-5.5.1.6}}
+
{{#set: common name=long_chain_acyl-_synthetase}}
−
{{#set: gene associated=Tiso_gene_9838|Tiso_gene_13414}}
+
{{#set: common name=acyl-_synthetase}}
−
{{#set: in pathway=PWY-7397|PWY1F-FLAVSYN|PWY-6787}}
+
{{#set: common name=ORF}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: ec number=EC-6.2.1.3}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: gene associated=Tiso_gene_10876|Tiso_gene_135|Tiso_gene_7855|Tiso_gene_348|Tiso_gene_500|Tiso_gene_9394|Tiso_gene_13394|Tiso_gene_4191|Tiso_gene_136}}
−
{{#set: reconstruction source=esiliculosus}}
+
{{#set: in pathway=}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction source=in-silico_annotation}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:07, 21 March 2018

Reaction RXN-13290

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 15-tetracosenoate—CoA ligase
    • polyketide_synthase
    • long_chain_acyl-_synthetase
    • acyl-_synthetase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 coenzyme A[c] + 1 (15Z)-tetracosenoate[c] + 1 ATP[c] => 1 diphosphate[c] + 1 (Z)-15-tetracosenoyl-CoA[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-13290&oldid=39622"