Difference between revisions of "ANAGLYCOLYSIS-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOGENTISATE-12-DIOXYGENASE-RXN HOMOGENTISATE-12-DIOXYGENASE-RXN] == * direction: ** LEFT-TO-RIGHT...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?obje...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOGENTISATE-12-DIOXYGENASE-RXN HOMOGENTISATE-12-DIOXYGENASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
−
** homogentisate_-dioxygenase
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** glycolysis III (from glucose)
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* ec number:
+
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** [http://enzyme.expasy.org/EC/1.13.11.5 EC-1.13.11.5]
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* Synonym(s):
 
* Synonym(s):
 +
** anaerobic glycolysis
 +
** Embden-Meyerhof-Parnas pathway
 +
** EMP pathway
 +
** glycolysis III (glucokinase)
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''10''' reactions found over '''10''' reactions in the full pathway
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** 1 [[HOMOGENTISATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[4-MALEYL-ACETOACETATE]][c]
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* [[2PGADEHYDRAT-RXN]]
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* With common name(s):
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** 4 associated gene(s):
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** 1 homogentisate[c] '''+''' 1 oxygen[c] '''=>''' 1 H+[c] '''+''' 1 4-maleyl-acetoacetate[c]
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*** [[Tiso_gene_8720]]
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*** [[Tiso_gene_14718]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_5619]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_13317]]
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* [[Tiso_gene_20095]]
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** 7 reconstruction source(s) associated:
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** IN-SILICO_ANNOTATION
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*** [[annotation-experimental_annotation]]
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***AUTOMATED-NAME-MATCH
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*** [[orthology-esiliculosus]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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== Pathways  ==
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*** [[orthology-athaliana]]
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* [[TYRFUMCAT-PWY]], L-tyrosine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=TYRFUMCAT-PWY TYRFUMCAT-PWY]
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*** [[orthology-synechocystis]]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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*** [[manual-primary_network]]
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== Reconstruction information  ==
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*** [[orthology-creinhardtii]]
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* [[orthology]]:
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* [[6PFRUCTPHOS-RXN]]
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** [[pantograph]]:
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** 2 associated gene(s):
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*** [[esiliculosus]]
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*** [[Tiso_gene_5733]]
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* [[annotation]]:
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*** [[Tiso_gene_596]]
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** [[pathwaytools]]:
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** 6 reconstruction source(s) associated:
−
*** [[in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
 +
* [[F16ALDOLASE-RXN]]
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** 6 associated gene(s):
 +
*** [[Tiso_gene_12272]]
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*** [[Tiso_gene_65]]
 +
*** [[Tiso_gene_9119]]
 +
*** [[Tiso_gene_14568]]
 +
*** [[Tiso_gene_9179]]
 +
*** [[Tiso_gene_9118]]
 +
** 5 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-experimental_annotation]]
 +
* [[GAPOXNPHOSPHN-RXN]]
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** 5 associated gene(s):
 +
*** [[Tiso_gene_20000]]
 +
*** [[Tiso_gene_235]]
 +
*** [[Tiso_gene_10646]]
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*** [[Tiso_gene_3344]]
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*** [[Tiso_gene_6766]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[GLUCOKIN-RXN]]
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** 2 associated gene(s):
 +
*** [[Tiso_gene_3107]]
 +
*** [[Tiso_gene_1303]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-synechocystis]]
 +
*** [[orthology-esiliculosus]]
 +
* [[PEPDEPHOS-RXN]]
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** 4 associated gene(s):
 +
*** [[Tiso_gene_18206]]
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*** [[Tiso_gene_14504]]
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*** [[Tiso_gene_974]]
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*** [[Tiso_gene_14505]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[PGLUCISOM-RXN]]
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** 1 associated gene(s):
 +
*** [[Tiso_gene_19480]]
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** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[PHOSGLYPHOS-RXN]]
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** 6 associated gene(s):
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*** [[Tiso_gene_3526]]
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*** [[Tiso_gene_18264]]
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*** [[Tiso_gene_3527]]
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*** [[Tiso_gene_18263]]
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*** [[Tiso_gene_12104]]
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*** [[Tiso_gene_14642]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
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* [[RXN-15513]]
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** 8 associated gene(s):
 +
*** [[Tiso_gene_7201]]
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*** [[Tiso_gene_14530]]
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*** [[Tiso_gene_16271]]
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*** [[Tiso_gene_9922]]
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*** [[Tiso_gene_2841]]
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*** [[Tiso_gene_2365]]
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*** [[Tiso_gene_14664]]
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*** [[Tiso_gene_9923]]
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** 2 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
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* [[TRIOSEPISOMERIZATION-RXN]]
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** 4 associated gene(s):
 +
*** [[Tiso_gene_19961]]
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*** [[Tiso_gene_20000]]
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*** [[Tiso_gene_19962]]
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*** [[Tiso_gene_10646]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
−
* RHEA:
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{{#set: taxonomic range=TAX-2759}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15449 15449]
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{{#set: taxonomic range=TAX-2}}
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* LIGAND-RXN:
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{{#set: common name=glycolysis III (from glucose)}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02519 R02519]
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{{#set: common name=anaerobic glycolysis|Embden-Meyerhof-Parnas pathway|EMP pathway|glycolysis III (glucokinase)}}
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* UNIPROT:
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{{#set: reaction found=10}}
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** [http://www.uniprot.org/uniprot/Q9Y041 Q9Y041]
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{{#set: total reaction=10}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: completion rate=100.0}}
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{{#set: common name=homogentisate_-dioxygenase}}
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−
{{#set: ec number=EC-1.13.11.5}}
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−
{{#set: gene associated=Tiso_gene_20095}}
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−
{{#set: in pathway=TYRFUMCAT-PWY}}
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−
{{#set: reconstruction category=orthology}}
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−
{{#set: reconstruction tool=pantograph}}
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−
{{#set: reconstruction source=esiliculosus}}
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−
{{#set: reconstruction category=annotation}}
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−
{{#set: reconstruction tool=pathwaytools}}
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−
{{#set: reconstruction source=in-silico_annotation}}
+

Latest revision as of 19:07, 21 March 2018

Pathway ANAGLYCOLYSIS-PWY

  • taxonomic range:
  • common name:
    • glycolysis III (from glucose)
  • Synonym(s):
    • anaerobic glycolysis
    • Embden-Meyerhof-Parnas pathway
    • EMP pathway
    • glycolysis III (glucokinase)

Reaction(s) found

10 reactions found over 10 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=ANAGLYCOLYSIS-PWY&oldid=39632"