Difference between revisions of "APIGNAR-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=L-CYSTEATE L-CYSTEATE] == * smiles: ** C(C([N+])C(=O)[O-])S(=O)(=O)[O-] * inchi key: ** InChIKe...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=APIGNAR-RXN APIGNAR-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Naringenin chalcone iso...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=L-CYSTEATE L-CYSTEATE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=APIGNAR-RXN APIGNAR-RXN] ==
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* smiles:
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* direction:
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** C(C([N+])C(=O)[O-])S(=O)(=O)[O-]
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=XVOYSCVBGLVSOL-REOHCLBHSA-M
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* common name:
 
* common name:
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** L-cysteate
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** Naringenin chalcone isomerase
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* molecular weight:
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** atp-dependent_rna_helicase_dhx30-like
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** 168.144   
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* ec number:
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** [http://enzyme.expasy.org/EC/5.5.1.6 EC-5.5.1.6]
 
* Synonym(s):
 
* Synonym(s):
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** L-cysteic acid
 
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** 3-sulfoalanine
 
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** 2-amino-3-sulfopropionic acid
 
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** (R)-cysteate
 
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** 3-sulfo-L-alanine
 
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** (2R)-2-amino-3-sulfopropanoic acid
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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== Reaction(s) of unknown directionality ==
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** 1 [[APIGENIN]][c] '''=>''' 1 [[NARINGENIN-CMPD]][c]
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* [[RXN-11737]]
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* With common name(s):
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** 1 2',4,4',6'-tetrahydroxychalcone[c] '''=>''' 1 (2S)-naringenin[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_13414]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_9838]]
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[PWY-7397]], naringenin biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7397 PWY-7397]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY1F-FLAVSYN]], flavonoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6787]], flavonoid biosynthesis (in equisetum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6787 PWY-6787]
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** '''5''' reactions found over '''10''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=7140381 7140381]
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** [http://www.genome.jp/dbget-bin/www_bget?R02446 R02446]
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* HMDB : HMDB02757
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* UNIPROT:
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P11650 P11650]
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** [http://www.genome.jp/dbget-bin/www_bget?C00506 C00506]
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** [http://www.uniprot.org/uniprot/P11651 P11651]
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/P41088 P41088]
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** [http://www.chemspider.com/Chemical-Structure.5482600.html 5482600]
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** [http://www.uniprot.org/uniprot/P14298 P14298]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/Q42925 Q42925]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58090 58090]
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** [http://www.uniprot.org/uniprot/Q42926 Q42926]
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* METABOLIGHTS : MTBLC58090
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** [http://www.uniprot.org/uniprot/Q08704 Q08704]
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{{#set: smiles=C(C([N+])C(=O)[O-])S(=O)(=O)[O-]}}
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** [http://www.uniprot.org/uniprot/P28012 P28012]
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{{#set: inchi key=InChIKey=XVOYSCVBGLVSOL-REOHCLBHSA-M}}
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** [http://www.uniprot.org/uniprot/P41089 P41089]
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{{#set: common name=L-cysteate}}
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** [http://www.uniprot.org/uniprot/O81980 O81980]
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{{#set: molecular weight=168.144    }}
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** [http://www.uniprot.org/uniprot/O22604 O22604]
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{{#set: common name=L-cysteic acid|3-sulfoalanine|2-amino-3-sulfopropionic acid|(R)-cysteate|3-sulfo-L-alanine|(2R)-2-amino-3-sulfopropanoic acid}}
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** [http://www.uniprot.org/uniprot/O22651 O22651]
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{{#set: consumed or produced by=RXN-11737}}
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** [http://www.uniprot.org/uniprot/Q43754 Q43754]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Naringenin chalcone isomerase}}
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{{#set: common name=atp-dependent_rna_helicase_dhx30-like}}
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{{#set: ec number=EC-5.5.1.6}}
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{{#set: gene associated=Tiso_gene_13414|Tiso_gene_9838}}
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{{#set: in pathway=PWY-7397|PWY1F-FLAVSYN|PWY-6787}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:07, 21 March 2018

Reaction APIGNAR-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Naringenin chalcone isomerase
    • atp-dependent_rna_helicase_dhx30-like
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 2',4,4',6'-tetrahydroxychalcone[c] => 1 (2S)-naringenin[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7397, naringenin biosynthesis (engineered): PWY-7397
    • 2 reactions found over 4 reactions in the full pathway
  • PWY1F-FLAVSYN, flavonoid biosynthesis: PWY1F-FLAVSYN
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6787, flavonoid biosynthesis (in equisetum): PWY-6787
    • 5 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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