Difference between revisions of "PWY-2941"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13374 RXN-13374] == * direction: ** LEFT-TO-RIGHT * common name: ** 9-cis-epoxycarotenoid_dioxy...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-12...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13374 RXN-13374] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-1239]
 
* common name:
 
* common name:
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** 9-cis-epoxycarotenoid_dioxygenase
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** L-lysine biosynthesis II
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** 9-cis-epoxycarotenoid_neoxanthin_cleavage_enzyme-like_protein
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** beta-carotene
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* ec number:
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** [http://enzyme.expasy.org/EC/1.13.11.63 EC-1.13.11.63]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''6''' reactions found over '''9''' reactions in the full pathway
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** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[CPD1F-129]][c] '''=>''' 2 [[RETINAL]][c]
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* [[ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 oxygen[c] '''+''' 1 all-trans-β-carotene[c] '''=>''' 2 all-trans-retinal[c]
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*** [[Tiso_gene_18603]]
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** 7 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-esiliculosus]]
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* [[Tiso_gene_4653]]
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*** [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-athaliana]]
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***EC-NUMBER
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*** [[orthology-synechocystis]]
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* [[Tiso_gene_13078]]
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*** [[manual-primary_network]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-creinhardtii]]
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***EC-NUMBER
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* [[ASPARTATEKIN-RXN]]
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* [[Tiso_gene_13079]]
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** 4 associated gene(s):
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_4345]]
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***EC-NUMBER
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*** [[Tiso_gene_17057]]
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* [[Tiso_gene_7740]]
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*** [[Tiso_gene_13809]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_16097]]
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***EC-NUMBER
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** 7 reconstruction source(s) associated:
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== Pathways  ==
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*** [[annotation-experimental_annotation]]
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* [[PWY-6857]], retinol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6857 PWY-6857]
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*** [[orthology-esiliculosus]]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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*** [[annotation-in-silico_annotation]]
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== Reconstruction information  ==
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*** [[orthology-athaliana]]
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* [[annotation]]:
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*** [[orthology-synechocystis]]
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** [[pathwaytools]]:
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*** [[manual-primary_network]]
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*** [[in-silico_annotation]]
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*** [[orthology-creinhardtii]]
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* [[DIAMINOPIMDECARB-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_10737]]
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*** [[Tiso_gene_12041]]
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** 6 reconstruction source(s) associated:
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[DIAMINOPIMEPIM-RXN]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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* [[DIHYDRODIPICSYN-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_14829]]
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** 3 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-14014]]
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** 1 associated gene(s):
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*** [[Tiso_gene_13314]]
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** 3 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=2.3.1.89-RXN 2.3.1.89-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=N-ACETYLDIAMINOPIMELATE-DEACETYLASE-RXN N-ACETYLDIAMINOPIMELATE-DEACETYLASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-4822 RXN-4822]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-1239}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32888 32888]
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{{#set: common name=L-lysine biosynthesis II}}
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* LIGAND-RXN:
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{{#set: reaction found=6}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00032 R00032]
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{{#set: total reaction=9}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: completion rate=67.0}}
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{{#set: common name=9-cis-epoxycarotenoid_dioxygenase}}
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{{#set: common name=9-cis-epoxycarotenoid_neoxanthin_cleavage_enzyme-like_protein}}
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{{#set: common name=beta-carotene}}
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{{#set: ec number=EC-1.13.11.63}}
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{{#set: gene associated=Tiso_gene_4653|Tiso_gene_13078|Tiso_gene_13079|Tiso_gene_7740}}
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{{#set: in pathway=PWY-6857}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 19:07, 21 March 2018

Pathway PWY-2941

  • taxonomic range:
  • common name:
    • L-lysine biosynthesis II
  • Synonym(s):

Reaction(s) found

6 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-2941&oldid=39636"