Difference between revisions of "RXN-13374"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.3.37-RXN 1.1.3.37-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** xylitol_oxidas...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13374 RXN-13374] == * direction: ** LEFT-TO-RIGHT * common name: ** 9-cis-epoxycarotenoid_dioxy...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.3.37-RXN 1.1.3.37-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13374 RXN-13374] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** ORF
+
** 9-cis-epoxycarotenoid_dioxygenase
−
** xylitol_oxidase
+
** 9-cis-epoxycarotenoid_neoxanthin_cleavage_enzyme-like_protein
−
** mitochondrial_l-galactono-_-lactone_dehydrogenase
+
** beta-carotene
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.3.37 EC-1.1.3.37]
+
** [http://enzyme.expasy.org/EC/1.13.11.63 EC-1.13.11.63]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[CPD-356]][c] '''=>''' 1 [[CPD-1789]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c]
+
** 1 [[CPD1F-129]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 2 [[RETINAL]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 oxygen[c] '''+''' 1 D-arabinono-1,4-lactone[c] '''=>''' 1 dehydro-D-arabinono-1,4-lactone[c] '''+''' 1 hydrogen peroxide[c]
+
** 1 all-trans-β-carotene[c] '''+''' 1 oxygen[c] '''=>''' 2 all-trans-retinal[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_210]]
+
* Gene: [[Tiso_gene_13078]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_14187]]
+
* Gene: [[Tiso_gene_4653]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_6787]]
+
* Gene: [[Tiso_gene_7740]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13079]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY3O-6]], dehydro-D-arabinono-1,4-lactone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-6 PWY3O-6]
+
* [[PWY-6857]], retinol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6857 PWY-6857]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 37: Line 40:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23756 23756]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32888 32888]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02715 R02715]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00032 R00032]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=ORF}}
+
{{#set: common name=9-cis-epoxycarotenoid_dioxygenase}}
−
{{#set: common name=xylitol_oxidase}}
+
{{#set: common name=9-cis-epoxycarotenoid_neoxanthin_cleavage_enzyme-like_protein}}
−
{{#set: common name=mitochondrial_l-galactono-_-lactone_dehydrogenase}}
+
{{#set: common name=beta-carotene}}
−
{{#set: ec number=EC-1.1.3.37}}
+
{{#set: ec number=EC-1.13.11.63}}
−
{{#set: gene associated=Tiso_gene_210|Tiso_gene_14187|Tiso_gene_6787}}
+
{{#set: gene associated=Tiso_gene_13078|Tiso_gene_4653|Tiso_gene_7740|Tiso_gene_13079}}
−
{{#set: in pathway=PWY3O-6}}
+
{{#set: in pathway=PWY-6857}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-in-silico_annotation}}
 
{{#set: reconstruction source=annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:07, 21 March 2018

Reaction RXN-13374

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 9-cis-epoxycarotenoid_dioxygenase
    • 9-cis-epoxycarotenoid_neoxanthin_cleavage_enzyme-like_protein
    • beta-carotene
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 all-trans-β-carotene[c] + 1 oxygen[c] => 2 all-trans-retinal[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6857, retinol biosynthesis: PWY-6857
    • 3 reactions found over 7 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-13374&oldid=39639"