Difference between revisions of "PWY-6538"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16540 RXN-16540] == * direction: ** LEFT-TO-RIGHT * common name: ** acyl-coenzyme_a_oxidase **...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6538 PWY-6538] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16540 RXN-16540] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6538 PWY-6538] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** acyl-coenzyme_a_oxidase
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** caffeine degradation III (bacteria, via demethylation)
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** ORF
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** acyl-_dehydrogenase
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** acyl-CoA_dehydrogenase
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* ec number:
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** [http://enzyme.expasy.org/EC/1.3.8.9 EC-1.3.8.9]
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* Synonym(s):
 
* Synonym(s):
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** caffeine degradation (bacteria)
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''2''' reactions found over '''7''' reactions in the full pathway
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** 1 [[PALMITYL-COA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ETF-Oxidized]][c] '''=>''' 1 [[ETF-Reduced]][c] '''+''' 1 [[CPD0-2117]][c]
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* [[RXN0-901]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 palmitoyl-CoA[c] '''+''' 1 H+[c] '''+''' 1 an oxidized electron-transfer flavoprotein[c] '''=>''' 1 a reduced electron-transfer flavoprotein[c] '''+''' 1 trans-hexadec-2-enoyl-CoA[c]
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*** [[Tiso_gene_11775]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-athaliana]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_6475]]
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* [[XANTHINE-OXIDASE-RXN]]
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** IN-SILICO_ANNOTATION
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** 1 associated gene(s):
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***EC-NUMBER
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*** [[Tiso_gene_11775]]
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* [[Tiso_gene_883]]
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** 1 reconstruction source(s) associated:
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** EXPERIMENTAL_ANNOTATION
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*** [[orthology-athaliana]]
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***EC-NUMBER
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== Reaction(s) not found ==
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* [[Tiso_gene_18566]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11513 RXN-11513]
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** IN-SILICO_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11516 RXN-11516]
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***EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11517 RXN-11517]
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* [[Tiso_gene_5991]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11518 RXN-11518]
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** IN-SILICO_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13106 RXN-13106]
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***EC-NUMBER
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* [[Tiso_gene_17967]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_16631]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-7654]], (8E,10E)-dodeca-8,10-dienol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7654 PWY-7654]
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** '''6''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-7656]], Spodoptera littoralis pheromone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7656 PWY-7656]
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** '''6''' reactions found over '''22''' reactions in the full pathway
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== Reconstruction information  ==
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* UM-BBD-PWY : caf
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{{#set: common name=acyl-coenzyme_a_oxidase}}
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* LIGAND-MAP:
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{{#set: common name=ORF}}
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** [http://www.genome.jp/dbget-bin/www_bget?map00232 map00232]
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{{#set: common name=acyl-_dehydrogenase}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: common name=acyl-CoA_dehydrogenase}}
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{{#set: common name=caffeine degradation III (bacteria, via demethylation)}}
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{{#set: ec number=EC-1.3.8.9}}
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{{#set: common name=caffeine degradation (bacteria)}}
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{{#set: gene associated=Tiso_gene_6475|Tiso_gene_883|Tiso_gene_18566|Tiso_gene_5991|Tiso_gene_17967|Tiso_gene_16631}}
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{{#set: reaction found=2}}
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{{#set: in pathway=PWY-7654|PWY-7656}}
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{{#set: total reaction=7}}
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{{#set: reconstruction category=annotation}}
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{{#set: completion rate=29.0}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:07, 21 March 2018

Pathway PWY-6538

  • taxonomic range:
  • common name:
    • caffeine degradation III (bacteria, via demethylation)
  • Synonym(s):
    • caffeine degradation (bacteria)

Reaction(s) found

2 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6538&oldid=39651"