Difference between revisions of "Tiso gene 13083"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13398 RXN-13398] == * direction: ** LEFT-TO-RIGHT * common name: ** rieske_2fe-2sdomainiss ** t...")
(Created page with "Category:Gene == Gene Tiso_gene_13083 == * right end position: ** 3632 * transcription direction: ** POSITIVE * left end position: ** 2216 * centisome position: ** 33.8682...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13398 RXN-13398] ==
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== Gene Tiso_gene_13083 ==
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* direction:
+
* right end position:
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** LEFT-TO-RIGHT
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** 3632
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* common name:
+
* transcription direction:
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** rieske_2fe-2sdomainiss
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** POSITIVE
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** tic55_component_of_chloroplast_import_machinery
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* left end position:
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** isp_domain-containing_protein
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** 2216
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/1.14.13.122 EC-1.14.13.122]
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** 33.868256   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
+
* Reaction: [[2.3.1.41-RXN]]
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** 2 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[NADPH]][c] '''+''' 1 [[CHLOROPHYLLIDE-A]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[CPD-7014]][c] '''+''' 3 [[WATER]][c] '''+''' 2 [[NADP]][c]
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** Source: [[annotation-experimental_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 2 oxygen[c] '''+''' 2 NADPH[c] '''+''' 1 chlorophyllide a[c] '''+''' 2 H+[c] '''=>''' 1 chlorophyllide b[c] '''+''' 3 H2O[c] '''+''' 2 NADP+[c]
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* Reaction: [[3-OXOACYL-ACP-REDUCT-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[annotation-experimental_annotation]]
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* [[Tiso_gene_8091]]
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*** Assignment: ec-number
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-esiliculosus]]
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***EC-NUMBER
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* Reaction: [[PYRIDOXAL-4-DEHYDROGENASE-RXN]]
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* [[Tiso_gene_152]]
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** Source: [[annotation-experimental_annotation]]
−
** IN-SILICO_ANNOTATION
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*** Assignment: automated-name-match
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***EC-NUMBER
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* Reaction: [[RXN-10060]]
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* [[Tiso_gene_12611]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
−
***EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
−
* [[Tiso_gene_13817]]
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*** Assignment: ec-number
−
** IN-SILICO_ANNOTATION
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** Source: [[orthology-esiliculosus]]
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***EC-NUMBER
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* Reaction: [[RXN-10655]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_4002]]
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*** Assignment: ec-number
−
** IN-SILICO_ANNOTATION
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** Source: [[annotation-experimental_annotation]]
−
***EC-NUMBER
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*** Assignment: ec-number
−
== Pathways  ==
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** Source: [[orthology-esiliculosus]]
−
== Reconstruction information  ==
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* Reaction: [[RXN-10659]]
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* [[orthology]]:
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** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]:
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*** Assignment: ec-number
−
*** [[esiliculosus]]
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** Source: [[annotation-experimental_annotation]]
−
* [[annotation]]:
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*** Assignment: ec-number
−
** [[pathwaytools]]:
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** Source: [[orthology-esiliculosus]]
−
*** [[in-silico_annotation]]
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* Reaction: [[RXN-11476]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-11480]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-12994]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: automated-name-match
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-13008]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-13443]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: automated-name-match
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-16616]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-16622]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-16626]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-16630]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9514]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-9518]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-9524]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-9528]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-9532]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-9536]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-9540]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-9544]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-9552]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-9556]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-9633]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN0-2142]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-1050]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-1053]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-1247]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-157]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-163]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-182]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-184]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-203]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-240]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-252]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-260]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-262]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-287]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-349]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-358]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-364]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-384]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-408]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-409]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-469]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-481]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-508]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-613]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-617]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-637]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-717]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-72]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-853]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-881]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-951]]
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways associated ==
 +
* [[PWY-7388]]
 +
* [[PWY-5367]]
 +
* [[PWY-5972]]
 +
* [[PWY-5973]]
 +
* [[PWY-5971]]
 +
* [[PWY-5499]]
 +
* [[PWY0-862]]
 +
* [[PWY-7053]]
 +
* [[PWY-6113]]
 +
* [[PWY-7619]]
 +
* [[PWY-6282]]
 +
* [[PWY-5994]]
 +
* [[PWY3O-355]]
 +
* [[PWY-7724]]
 +
* [[PWY-7727]]
 +
* [[FASYN-ELONG-PWY]]
 +
* [[PWY-6519]]
 +
* [[PWY-7602]]
 +
* [[PWY-7606]]
 +
* [[PWY-5989]]
 +
* [[PWYG-321]]
 +
* [[PWY-7663]]
 +
* [[PWY-7664]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=3632}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22139 22139]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=2216}}
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** [http://www.genome.jp/dbget-bin/www_bget?R10080 R10080]
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{{#set: centisome position=33.868256    }}
−
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=2.3.1.41-RXN|3-OXOACYL-ACP-REDUCT-RXN|PYRIDOXAL-4-DEHYDROGENASE-RXN|RXN-10060|RXN-10655|RXN-10659|RXN-11476|RXN-11480|RXN-12994|RXN-13008|RXN-13443|RXN-16616|RXN-16622|RXN-16626|RXN-16630|RXN-9514|RXN-9518|RXN-9524|RXN-9528|RXN-9532|RXN-9536|RXN-9540|RXN-9544|RXN-9552|RXN-9556|RXN-9633|RXN0-2142|RXN1G-1050|RXN1G-1053|RXN1G-1247|RXN1G-157|RXN1G-163|RXN1G-182|RXN1G-184|RXN1G-203|RXN1G-240|RXN1G-252|RXN1G-260|RXN1G-262|RXN1G-287|RXN1G-349|RXN1G-358|RXN1G-364|RXN1G-384|RXN1G-408|RXN1G-409|RXN1G-469|RXN1G-481|RXN1G-508|RXN1G-613|RXN1G-617|RXN1G-637|RXN1G-717|RXN1G-72|RXN1G-853|RXN1G-881|RXN1G-951}}
−
{{#set: common name=rieske_2fe-2sdomainiss}}
+
{{#set: pathway associated=PWY-7388|PWY-5367|PWY-5972|PWY-5973|PWY-5971|PWY-5499|PWY0-862|PWY-7053|PWY-6113|PWY-7619|PWY-6282|PWY-5994|PWY3O-355|PWY-7724|PWY-7727|FASYN-ELONG-PWY|PWY-6519|PWY-7602|PWY-7606|PWY-5989|PWYG-321|PWY-7663|PWY-7664}}
−
{{#set: common name=tic55_component_of_chloroplast_import_machinery}}
+
−
{{#set: common name=isp_domain-containing_protein}}
+
−
{{#set: ec number=EC-1.14.13.122}}
+
−
{{#set: gene associated=Tiso_gene_8091|Tiso_gene_152|Tiso_gene_12611|Tiso_gene_13817|Tiso_gene_4002}}
+
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=in-silico_annotation}}
+

Latest revision as of 19:08, 21 March 2018

Gene Tiso_gene_13083

  • right end position:
    • 3632
  • transcription direction:
    • POSITIVE
  • left end position:
    • 2216
  • centisome position:
    • 33.868256
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_13083&oldid=39702"