Difference between revisions of "Tiso gene 5675"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9651 RXN-9651] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** 3-oxoa...")
(Created page with "Category:Gene == Gene Tiso_gene_5675 == * right end position: ** 11005 * transcription direction: ** POSITIVE * left end position: ** 8899 * centisome position: ** 68.0455...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9651 RXN-9651] ==
+
== Gene Tiso_gene_5675 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 11005
−
* common name:
+
* transcription direction:
−
** polyketide_synthase
+
** POSITIVE
−
** 3-oxoacyl-synthase
+
* left end position:
−
* ec number:
+
** 8899
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
* centisome position:
−
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
+
** 68.04558   
−
** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[FAA]]
−
** 1 [[PROTON]][c] '''+''' 1 [[Octanoyl-ACPs]][c] '''+''' 1 [[MALONYL-COA]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[3-oxo-decanoyl-ACPs]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
** Source: [[orthology-creinhardtii]]
−
* With common name(s):
+
* Reaction: [[FUMARYLACETOACETASE-RXN]]
−
** 1 H+[c] '''+''' 1 an octanoyl-[acp][c] '''+''' 1 malonyl-CoA[c] '''=>''' 1 coenzyme A[c] '''+''' 1 a 3-oxo-decanoyl-[acp][c] '''+''' 1 CO2[c]
+
** Source: [[annotation-in-silico_annotation]]
−
 
+
*** Assignment: ec-number
−
== Genes associated with this reaction  ==
+
** Source: [[orthology-athaliana]]
−
Genes have been associated with this reaction based on different elements listed below.
+
== Pathways associated ==
−
* [[Tiso_gene_136]]
+
* [[TYRFUMCAT-PWY]]
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_15991]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_10876]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_500]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13394]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_5939]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_14485]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_19302]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_135]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
== Pathways ==
+
−
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
+
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[esiliculosus]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: right end position=11005}}
−
{{#set: common name=polyketide_synthase}}
+
{{#set: transcription direction=POSITIVE}}
−
{{#set: common name=3-oxoacyl-synthase}}
+
{{#set: left end position=8899}}
−
{{#set: ec number=EC-2.3.1.86}}
+
{{#set: centisome position=68.04558    }}
−
{{#set: ec number=EC-2.3.1.85}}
+
{{#set: reaction associated=FAA|FUMARYLACETOACETASE-RXN}}
−
{{#set: ec number=EC-2.3.1.41}}
+
{{#set: pathway associated=TYRFUMCAT-PWY}}
−
{{#set: gene associated=Tiso_gene_136|Tiso_gene_15991|Tiso_gene_10876|Tiso_gene_500|Tiso_gene_13394|Tiso_gene_5939|Tiso_gene_14485|Tiso_gene_19302|Tiso_gene_135}}
+
−
{{#set: in pathway=PWY-5994}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 20:08, 21 March 2018

Gene Tiso_gene_5675

  • right end position:
    • 11005
  • transcription direction:
    • POSITIVE
  • left end position:
    • 8899
  • centisome position:
    • 68.04558
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5675&oldid=39766"