Difference between revisions of "DIHYDRODIPICSYN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9651 RXN-9651] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** 3-oxoa...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDRODIPICSYN-RXN DIHYDRODIPICSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** dihydro...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9651 RXN-9651] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDRODIPICSYN-RXN DIHYDRODIPICSYN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** polyketide_synthase
+
** dihydrodipicolinate_synthase
−
** 3-oxoacyl-synthase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/4.3.3.7 EC-4.3.3.7]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
+
−
** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** dihydropicolinate synthetase
 +
** dihydrodipicolinic acid synthase
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[Octanoyl-ACPs]][c] '''+''' 1 [[MALONYL-COA]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[3-oxo-decanoyl-ACPs]][c]
+
** 1 [[PYRUVATE]][c] '''+''' 1 [[L-ASPARTATE-SEMIALDEHYDE]][c] '''=>''' 1 [[CPD-14443]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 an octanoyl-[acp][c] '''+''' 1 malonyl-CoA[c] '''=>''' 1 coenzyme A[c] '''+''' 1 CO2[c] '''+''' 1 a 3-oxo-decanoyl-[acp][c]
+
** 1 pyruvate[c] '''+''' 1 L-aspartate-semialdehyde[c] '''=>''' 1 (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate[c] '''+''' 1 H+[c] '''+''' 1 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_135]]
+
* Gene: [[Tiso_gene_14829]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_15991]]
+
** Source: [[orthology-esiliculosus]]
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_136]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13394]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_14485]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_19302]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_10876]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_500]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_5939]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
+
* [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097]
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-2942]], L-lysine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
* Category: [[manual]]
−
** [[pathwaytools]]:
+
** Source: [[manual-primary_network]]
−
*** [[experimental_annotation]]
+
* Category: [[annotation]]
−
*** [[in-silico_annotation]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R10147 R10147]
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02292 R02292]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P43797 P43797]
 +
** [http://www.uniprot.org/uniprot/O26892 O26892]
 +
** [http://www.uniprot.org/uniprot/Q9Z6K9 Q9Z6K9]
 +
** [http://www.uniprot.org/uniprot/Q9X1K9 Q9X1K9]
 +
** [http://www.uniprot.org/uniprot/P19808 P19808]
 +
** [http://www.uniprot.org/uniprot/Q9ZM13 Q9ZM13]
 +
** [http://www.uniprot.org/uniprot/O05969 O05969]
 +
** [http://www.uniprot.org/uniprot/Q9CF61 Q9CF61]
 +
** [http://www.uniprot.org/uniprot/Q04796 Q04796]
 +
** [http://www.uniprot.org/uniprot/Q57695 Q57695]
 +
** [http://www.uniprot.org/uniprot/O25657 O25657]
 +
** [http://www.uniprot.org/uniprot/O67216 O67216]
 +
** [http://www.uniprot.org/uniprot/O29352 O29352]
 +
** [http://www.uniprot.org/uniprot/O84366 O84366]
 +
** [http://www.uniprot.org/uniprot/Q9PPB4 Q9PPB4]
 +
** [http://www.uniprot.org/uniprot/P63945 P63945]
 +
** [http://www.uniprot.org/uniprot/Q9JUU9 Q9JUU9]
 +
** [http://www.uniprot.org/uniprot/Q9LZX6 Q9LZX6]
 +
** [http://www.uniprot.org/uniprot/Q43038 Q43038]
 +
** [http://www.uniprot.org/uniprot/P49423 P49423]
 +
** [http://www.uniprot.org/uniprot/Q55513 Q55513]
 +
** [http://www.uniprot.org/uniprot/P0A6L2 P0A6L2]
 +
** [http://www.uniprot.org/uniprot/Q42948 Q42948]
 +
** [http://www.uniprot.org/uniprot/Q42940 Q42940]
 +
** [http://www.uniprot.org/uniprot/O86841 O86841]
 +
** [http://www.uniprot.org/uniprot/P24847 P24847]
 +
** [http://www.uniprot.org/uniprot/P24846 P24846]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=polyketide_synthase}}
+
{{#set: common name=dihydrodipicolinate_synthase}}
−
{{#set: common name=3-oxoacyl-synthase}}
+
{{#set: ec number=EC-4.3.3.7}}
−
{{#set: ec number=EC-2.3.1.86}}
+
{{#set: common name=dihydropicolinate synthetase|dihydrodipicolinic acid synthase}}
−
{{#set: ec number=EC-2.3.1.85}}
+
{{#set: gene associated=Tiso_gene_14829}}
−
{{#set: ec number=EC-2.3.1.41}}
+
{{#set: in pathway=PWY-5097|PWY-2942|DAPLYSINESYN-PWY|PWY-2941}}
−
{{#set: gene associated=Tiso_gene_135|Tiso_gene_15991|Tiso_gene_136|Tiso_gene_13394|Tiso_gene_14485|Tiso_gene_19302|Tiso_gene_10876|Tiso_gene_500|Tiso_gene_5939}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: in pathway=PWY-5994}}
+
{{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 19:09, 21 March 2018

Reaction DIHYDRODIPICSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • dihydrodipicolinate_synthase
  • ec number:
  • Synonym(s):
    • dihydropicolinate synthetase
    • dihydrodipicolinic acid synthase

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5097, L-lysine biosynthesis VI: PWY-5097
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-2942, L-lysine biosynthesis III: PWY-2942
    • 6 reactions found over 7 reactions in the full pathway
  • DAPLYSINESYN-PWY, L-lysine biosynthesis I: DAPLYSINESYN-PWY
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-2941, L-lysine biosynthesis II: PWY-2941
    • 6 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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