Difference between revisions of "SPHINGOLIPID-SYN-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2542 RXN-2542] == * direction: ** LEFT-TO-RIGHT * common name: ** mpbq_msbq_methyltransferase *...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=SPHINGOLIPID-SYN-PWY SPHINGOLIPID-SYN-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAG...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2542 RXN-2542] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=SPHINGOLIPID-SYN-PWY SPHINGOLIPID-SYN-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
 
* common name:
 
* common name:
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** mpbq_msbq_methyltransferase
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** sphingolipid biosynthesis (yeast)
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* ec number:
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** [http://enzyme.expasy.org/EC/2.1.1.295 EC-2.1.1.295]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''2''' reactions found over '''8''' reactions in the full pathway
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** 1 [[MPBQ]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DMPBQ]][c]
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* [[3-DEHYDROSPHINGANINE-REDUCTASE-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 2-methyl-6-phytyl-1,4-benzoquinol[c] '''+''' 1 S-adenosyl-L-methionine[c] '''=>''' 1 H+[c] '''+''' 1 S-adenosyl-L-homocysteine[c] '''+''' 1 2,3-dimethyl-6-phytyl-1,4-benzoquinol[c]
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*** [[Tiso_gene_18518]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_11392]]
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* [[SERINE-C-PALMITOYLTRANSFERASE-RXN]]
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** Source: [[orthology-synechocystis]]
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** 1 associated gene(s):
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_10992]]
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* Gene: [[Tiso_gene_2596]]
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** 3 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
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== Pathways  ==
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== Reaction(s) not found ==
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* [[PWY-1422]], vitamin E biosynthesis (tocopherols): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1422 PWY-1422]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-1380 RXN3O-1380]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-328 RXN3O-328]
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== Reconstruction information  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-4042 RXN3O-4042]
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* Category: [[orthology]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-581 RXN3O-581]
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** Source: [[orthology-creinhardtii]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-663 RXN3O-663]
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*** Tool: [[pantograph]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-680 RXN3O-680]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-4751}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07501 R07501]
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{{#set: common name=sphingolipid biosynthesis (yeast)}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction found=2}}
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{{#set: common name=mpbq_msbq_methyltransferase}}
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{{#set: total reaction=8}}
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{{#set: ec number=EC-2.1.1.295}}
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{{#set: completion rate=25.0}}
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{{#set: gene associated=Tiso_gene_11392|Tiso_gene_2596}}
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{{#set: in pathway=PWY-1422}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-creinhardtii|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:09, 21 March 2018

Pathway SPHINGOLIPID-SYN-PWY

  • taxonomic range:
  • common name:
    • sphingolipid biosynthesis (yeast)
  • Synonym(s):

Reaction(s) found

2 reactions found over 8 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=SPHINGOLIPID-SYN-PWY&oldid=39809"