Difference between revisions of "RXN-1884"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTIDINE--TRNA-LIGASE-RXN HISTIDINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common na...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1884 RXN-1884] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/1....")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTIDINE--TRNA-LIGASE-RXN HISTIDINE--TRNA-LIGASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1884 RXN-1884] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** histidyl-trna_synthetase_(c-terminal_region)_histidyl-trna_synthetase_(n-terminal_region)
 
−
** ORF
 
−
** atp-dependent_rna_helicase_dhx30-like
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.1.1.21 EC-6.1.1.21]
+
** [http://enzyme.expasy.org/EC/1.1.1.316 EC-1.1.1.316]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[HIS-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[HIS]][c] '''=>''' 1 [[Charged-HIS-tRNAs]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
+
** 1 [[NAD]][c] '''+''' 1 [[L-Galactopyranose]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[CPD-330]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a tRNAhis[c] '''+''' 1 ATP[c] '''+''' 1 L-histidine[c] '''=>''' 1 an L-histidyl-[tRNAhis][c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
+
** 1 NAD+[c] '''+''' 1 L-galactopyranose[c] '''=>''' 1 H+[c] '''+''' 1 NADH[c] '''+''' 1 L-galactono-1,4-lactone[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_8798]]
+
* Gene: [[Tiso_gene_14920]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_14624]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_18748]]
−
* [[Tiso_gene_13414]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_703]]
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
* [[Tiso_gene_12634]]
+
* Gene: [[Tiso_gene_4219]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-athaliana]]
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
* [[PWY-882]], L-ascorbate biosynthesis I (L-galactose pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-882 PWY-882]
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''6''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-athaliana]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
** Source: [[orthology-esiliculosus]]
−
** [[pathwaytools]]:
+
*** Tool: [[pantograph]]
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17313 17313]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31562 31562]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03655 R03655]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07675 R07675]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/Q9X0H5 Q9X0H5]
+
−
** [http://www.uniprot.org/uniprot/O58028 O58028]
+
−
** [http://www.uniprot.org/uniprot/O67223 O67223]
+
−
** [http://www.uniprot.org/uniprot/Q9ZK27 Q9ZK27]
+
−
** [http://www.uniprot.org/uniprot/Q9PPF4 Q9PPF4]
+
−
** [http://www.uniprot.org/uniprot/P56455 P56455]
+
−
** [http://www.uniprot.org/uniprot/Q58406 Q58406]
+
−
** [http://www.uniprot.org/uniprot/O32039 O32039]
+
−
** [http://www.uniprot.org/uniprot/O51160 O51160]
+
−
** [http://www.uniprot.org/uniprot/O66522 O66522]
+
−
** [http://www.uniprot.org/uniprot/Q9ZDL9 Q9ZDL9]
+
−
** [http://www.uniprot.org/uniprot/Q9JUZ9 Q9JUZ9]
+
−
** [http://www.uniprot.org/uniprot/Q9CE78 Q9CE78]
+
−
** [http://www.uniprot.org/uniprot/P47281 P47281]
+
−
** [http://www.uniprot.org/uniprot/O34459 O34459]
+
−
** [http://www.uniprot.org/uniprot/O83647 O83647]
+
−
** [http://www.uniprot.org/uniprot/O84547 O84547]
+
−
** [http://www.uniprot.org/uniprot/Q9Z7P1 Q9Z7P1]
+
−
** [http://www.uniprot.org/uniprot/P43823 P43823]
+
−
** [http://www.uniprot.org/uniprot/Q61035 Q61035]
+
−
** [http://www.uniprot.org/uniprot/P30053 P30053]
+
−
** [http://www.uniprot.org/uniprot/P46696 P46696]
+
−
** [http://www.uniprot.org/uniprot/P51348 P51348]
+
−
** [http://www.uniprot.org/uniprot/P75069 P75069]
+
−
** [http://www.uniprot.org/uniprot/Q55653 Q55653]
+
−
** [http://www.uniprot.org/uniprot/Q49027 Q49027]
+
−
** [http://www.uniprot.org/uniprot/P07263 P07263]
+
−
** [http://www.uniprot.org/uniprot/P60906 P60906]
+
−
** [http://www.uniprot.org/uniprot/P12081 P12081]
+
−
** [http://www.uniprot.org/uniprot/P93422 P93422]
+
−
** [http://www.uniprot.org/uniprot/O82413 O82413]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=histidyl-trna_synthetase_(c-terminal_region)_histidyl-trna_synthetase_(n-terminal_region)}}
+
{{#set: ec number=EC-1.1.1.316}}
−
{{#set: common name=ORF}}
+
{{#set: gene associated=Tiso_gene_14920|Tiso_gene_14624|Tiso_gene_18748|Tiso_gene_703|Tiso_gene_4219}}
−
{{#set: common name=atp-dependent_rna_helicase_dhx30-like}}
+
{{#set: in pathway=PWY-882}}
−
{{#set: ec number=EC-6.1.1.21}}
+
−
{{#set: gene associated=Tiso_gene_8798|Tiso_gene_13414|Tiso_gene_12634}}
+
−
{{#set: in pathway=TRNA-CHARGING-PWY}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=esiliculosus}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Latest revision as of 20:09, 21 March 2018

Reaction RXN-1884

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NAD+[c] + 1 L-galactopyranose[c] => 1 H+[c] + 1 NADH[c] + 1 L-galactono-1,4-lactone[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-882, L-ascorbate biosynthesis I (L-galactose pathway): PWY-882
    • 6 reactions found over 8 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-1884&oldid=39846"