Difference between revisions of "RXN-13193"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPAMINOTRANS-RXN ASPAMINOTRANS-RXN] == * direction: ** REVERSIBLE * common name: ** aminotransfera...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13193 RXN-13193] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPAMINOTRANS-RXN ASPAMINOTRANS-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13193 RXN-13193] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
−
* common name:
+
−
** aminotransferase
+
−
** aspartate_aminotransferase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.6.1.1 EC-2.6.1.1]
+
** [http://enzyme.expasy.org/EC/1.14.15.n EC-1.14.15.n]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[L-ASPARTATE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[OXALACETIC_ACID]][c]
+
** 2 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[CPD1F-130]][c] '''+''' 4 [[PROTON]][c] '''+''' 4 [[Reduced-ferredoxins]][c] '''=>''' 1 [[CPD1F-133]][c] '''+''' 4 [[Oxidized-ferredoxins]][c] '''+''' 2 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-aspartate[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 oxaloacetate[c]
+
** 2 oxygen[c] '''+''' 1 zeaxanthin[c] '''+''' 4 H+[c] '''+''' 4 a reduced ferredoxin [iron-sulfur] cluster[c] '''=>''' 1 violaxanthin[c] '''+''' 4 an oxidized ferredoxin [iron-sulfur] cluster[c] '''+''' 2 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_17718]]
+
* Gene: [[Tiso_gene_10919]]
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[orthology-athaliana]]
+
−
** Source: [[orthology-athaliana]]
+
−
** Source: [[orthology-athaliana]]
+
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
−
* Gene: [[Tiso_gene_6815]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
** Source: [[orthology-synechocystis]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
* Gene: [[Tiso_gene_13538]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
* Gene: [[Tiso_gene_15680]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
* Gene: [[Tiso_gene_17809]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: AUTOMATED-NAME-MATCH
 
−
* Gene: [[Tiso_gene_12889]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: AUTOMATED-NAME-MATCH
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7383]], anaerobic energy metabolism (invertebrates, cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7383 PWY-7383]
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
* [[ASPARTATE-DEG1-PWY]], L-aspartate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE-DEG1-PWY ASPARTATE-DEG1-PWY]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[ASPARTATESYN-PWY]], L-aspartate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATESYN-PWY ASPARTATESYN-PWY]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117]
 
−
** '''7''' reactions found over '''10''' reactions in the full pathway
 
−
* [[GLUTDEG-PWY]], L-glutamate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=GLUTDEG-PWY GLUTDEG-PWY]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[MALATE-ASPARTATE-SHUTTLE-PWY]], L-aspartate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=MALATE-ASPARTATE-SHUTTLE-PWY MALATE-ASPARTATE-SHUTTLE-PWY]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[ASPARAGINE-DEG1-PWY-1]], L-asparagine degradation III (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=ASPARAGINE-DEG1-PWY-1 ASPARAGINE-DEG1-PWY-1]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
−
* Category: [[annotation]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21824 21824]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14944 14944]
−
* LIGAND-RXN:
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14940 14940]
−
** [http://www.genome.jp/dbget-bin/www_bget?R00355 R00355]
+
{{#set: direction=LEFT-TO-RIGHT}}
−
* UNIPROT:
+
{{#set: ec number=EC-1.14.15.n}}
−
** [http://www.uniprot.org/uniprot/Q7LZ21 Q7LZ21]
+
{{#set: gene associated=Tiso_gene_10919}}
−
** [http://www.uniprot.org/uniprot/P08906 P08906]
+
{{#set: in pathway=}}
−
** [http://www.uniprot.org/uniprot/P12343 P12343]
+
{{#set: reconstruction category=orthology}}
−
** [http://www.uniprot.org/uniprot/Q06191 Q06191]
+
{{#set: reconstruction source=orthology-esiliculosus}}
−
** [http://www.uniprot.org/uniprot/Q02635 Q02635]
+
{{#set: reconstruction tool=pantograph}}
−
** [http://www.uniprot.org/uniprot/Q60317 Q60317]
+
−
** [http://www.uniprot.org/uniprot/O28151 O28151]
+
−
** [http://www.uniprot.org/uniprot/O67781 O67781]
+
−
** [http://www.uniprot.org/uniprot/P08907 P08907]
+
−
** [http://www.uniprot.org/uniprot/P12345 P12345]
+
−
** [http://www.uniprot.org/uniprot/Q9X0Y2 Q9X0Y2]
+
−
** [http://www.uniprot.org/uniprot/Q9PPF7 Q9PPF7]
+
−
** [http://www.uniprot.org/uniprot/Q9JVS3 Q9JVS3]
+
−
** [http://www.uniprot.org/uniprot/P53001 P53001]
+
−
** [http://www.uniprot.org/uniprot/P96847 P96847]
+
−
** [http://www.uniprot.org/uniprot/Q9K0P5 Q9K0P5]
+
−
** [http://www.uniprot.org/uniprot/Q9X224 Q9X224]
+
−
** [http://www.uniprot.org/uniprot/Q9Y9P0 Q9Y9P0]
+
−
** [http://www.uniprot.org/uniprot/Q9RWP3 Q9RWP3]
+
−
** [http://www.uniprot.org/uniprot/O66737 O66737]
+
−
** [http://www.uniprot.org/uniprot/O28650 O28650]
+
−
** [http://www.uniprot.org/uniprot/O30304 O30304]
+
−
** [http://www.uniprot.org/uniprot/Q9CEK7 Q9CEK7]
+
−
** [http://www.uniprot.org/uniprot/O27916 O27916]
+
−
** [http://www.uniprot.org/uniprot/O05237 O05237]
+
−
** [http://www.uniprot.org/uniprot/Q9YE99 Q9YE99]
+
−
** [http://www.uniprot.org/uniprot/O25383 O25383]
+
−
** [http://www.uniprot.org/uniprot/O27638 O27638]
+
−
** [http://www.uniprot.org/uniprot/O96142 O96142]
+
−
** [http://www.uniprot.org/uniprot/Q9ZLG5 Q9ZLG5]
+
−
** [http://www.uniprot.org/uniprot/P00507 P00507]
+
−
** [http://www.uniprot.org/uniprot/P44425 P44425]
+
−
** [http://www.uniprot.org/uniprot/Q59569 Q59569]
+
−
** [http://www.uniprot.org/uniprot/Q59197 Q59197]
+
−
** [http://www.uniprot.org/uniprot/P37833 P37833]
+
−
** [http://www.uniprot.org/uniprot/O48599 O48599]
+
−
** [http://www.uniprot.org/uniprot/O33822 O33822]
+
−
** [http://www.uniprot.org/uniprot/P05201 P05201]
+
−
** [http://www.uniprot.org/uniprot/P05202 P05202]
+
−
** [http://www.uniprot.org/uniprot/P14909 P14909]
+
−
** [http://www.uniprot.org/uniprot/P17174 P17174]
+
−
** [http://www.uniprot.org/uniprot/P33097 P33097]
+
−
** [http://www.uniprot.org/uniprot/Q43057 Q43057]
+
−
** [http://www.uniprot.org/uniprot/Q43305 Q43305]
+
−
** [http://www.uniprot.org/uniprot/Q42794 Q42794]
+
−
** [http://www.uniprot.org/uniprot/P12344 P12344]
+
−
** [http://www.uniprot.org/uniprot/Q01802 Q01802]
+
−
** [http://www.uniprot.org/uniprot/Q40325 Q40325]
+
−
** [http://www.uniprot.org/uniprot/P36692 P36692]
+
−
** [http://www.uniprot.org/uniprot/P28011 P28011]
+
−
** [http://www.uniprot.org/uniprot/Q42391 Q42391]
+
−
** [http://www.uniprot.org/uniprot/Q9L0L5 Q9L0L5]
+
−
** [http://www.uniprot.org/uniprot/Q53951 Q53951]
+
−
** [http://www.uniprot.org/uniprot/Q42803 Q42803]
+
−
** [http://www.uniprot.org/uniprot/Q42425 Q42425]
+
−
** [http://www.uniprot.org/uniprot/Q55128 Q55128]
+
−
** [http://www.uniprot.org/uniprot/P72859 P72859]
+
−
** [http://www.uniprot.org/uniprot/Q55453 Q55453]
+
−
** [http://www.uniprot.org/uniprot/Q55679 Q55679]
+
−
** [http://www.uniprot.org/uniprot/O48598 O48598]
+
−
** [http://www.uniprot.org/uniprot/Q42991 Q42991]
+
−
** [http://www.uniprot.org/uniprot/P46248 P46248]
+
−
** [http://www.uniprot.org/uniprot/O48548 O48548]
+
−
** [http://www.uniprot.org/uniprot/Q60013 Q60013]
+
−
** [http://www.uniprot.org/uniprot/P28734 P28734]
+
−
** [http://www.uniprot.org/uniprot/Q17994 Q17994]
+
−
** [http://www.uniprot.org/uniprot/Q17983 Q17983]
+
−
** [http://www.uniprot.org/uniprot/Q22066 Q22066]
+
−
** [http://www.uniprot.org/uniprot/Q22067 Q22067]
+
−
** [http://www.uniprot.org/uniprot/O01804 O01804]
+
−
** [http://www.uniprot.org/uniprot/O54170 O54170]
+
−
** [http://www.uniprot.org/uniprot/O42652 O42652]
+
−
** [http://www.uniprot.org/uniprot/O94320 O94320]
+
−
** [http://www.uniprot.org/uniprot/P46644 P46644]
+
−
** [http://www.uniprot.org/uniprot/P00504 P00504]
+
−
** [http://www.uniprot.org/uniprot/P00508 P00508]
+
−
** [http://www.uniprot.org/uniprot/P00509 P00509]
+
−
** [http://www.uniprot.org/uniprot/P00505 P00505]
+
−
** [http://www.uniprot.org/uniprot/P00503 P00503]
+
−
** [http://www.uniprot.org/uniprot/P00506 P00506]
+
−
** [http://www.uniprot.org/uniprot/P26563 P26563]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=aminotransferase}}
+
−
{{#set: common name=aspartate_aminotransferase}}
+
−
{{#set: ec number=EC-2.6.1.1}}
+
−
{{#set: gene associated=Tiso_gene_17718|Tiso_gene_6815|Tiso_gene_13538|Tiso_gene_15680|Tiso_gene_17809|Tiso_gene_12889}}
+
−
{{#set: in pathway=PWY-5913|PWY-7383|ASPARTATE-DEG1-PWY|ASPARTATESYN-PWY|PWY-7117|GLUTDEG-PWY|PWY-7115|MALATE-ASPARTATE-SHUTTLE-PWY|ASPARAGINE-DEG1-PWY-1}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:09, 21 March 2018

Reaction RXN-13193

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-13193&oldid=39866"