Difference between revisions of "DETOX1-PWY"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSINE--TRNA-LIGASE-RXN LYSINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=DETOX1-PWY DETOX1-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TA...")
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSINE--TRNA-LIGASE-RXN LYSINE--TRNA-LIGASE-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=DETOX1-PWY DETOX1-PWY] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
−
** lysine--trna_ligase
+
** superoxide radicals degradation
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/6.1.1.6 EC-6.1.1.6]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** removal of superoxide radicals
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''2''' reactions found over '''2''' reactions in the full pathway
−
** 1 [[LYS]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[LYS-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Charged-LYS-tRNAs]][c]
+
* [[CATAL-RXN]]
−
* With common name(s):
+
** 8 associated gene(s):
−
** 1 L-lysine[c] '''+''' 1 ATP[c] '''+''' 1 a tRNAlys[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 an L-lysyl-[tRNAlys][c]
+
*** [[Tiso_gene_3006]]
−
 
+
*** [[Tiso_gene_11607]]
−
== Genes associated with this reaction  ==
+
*** [[Tiso_gene_11916]]
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[Tiso_gene_12499]]
−
* [[Tiso_gene_16635]]
+
*** [[Tiso_gene_5435]]
−
** EXPERIMENTAL_ANNOTATION
+
*** [[Tiso_gene_4990]]
−
***EC-NUMBER
+
*** [[Tiso_gene_19683]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** [[Tiso_gene_15923]]
−
* [[Tiso_gene_6705]]
+
** 3 reconstruction source(s) associated:
−
** IN-SILICO_ANNOTATION
+
*** [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** [[annotation-experimental_annotation]]
−
** EXPERIMENTAL_ANNOTATION
+
*** [[orthology-synechocystis]]
−
***EC-NUMBER
+
* [[SUPEROX-DISMUT-RXN]]
−
** [[pantograph]]-[[esiliculosus]]
+
** 5 associated gene(s):
−
== Pathways  ==
+
*** [[Tiso_gene_3587]]
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
*** [[Tiso_gene_15757]]
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
*** [[Tiso_gene_12651]]
−
== Reconstruction information  ==
+
*** [[Tiso_gene_20023]]
−
* [[orthology]]:
+
*** [[Tiso_gene_12652]]
−
** [[pantograph]]:
+
** 4 reconstruction source(s) associated:
−
*** [[esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
−
* [[annotation]]:
+
*** [[annotation-experimental_annotation]]
−
** [[pathwaytools]]:
+
*** [[orthology-synechocystis]]
−
*** [[experimental_annotation]]
+
*** [[orthology-esiliculosus]]
−
*** [[in-silico_annotation]]
+
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
* ECOCYC:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03658 R03658]
+
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=DETOX1-PWY DETOX1-PWY]
−
* UNIPROT:
+
* ARACYC:
−
** [http://www.uniprot.org/uniprot/P41258 P41258]
+
** [http://metacyc.org/ARA/NEW-IMAGE?object=DETOX1-PWY DETOX1-PWY]
−
** [http://www.uniprot.org/uniprot/P46861 P46861]
+
{{#set: taxonomic range=TAX-2759}}
−
** [http://www.uniprot.org/uniprot/P47382 P47382]
+
{{#set: taxonomic range=TAX-2}}
−
** [http://www.uniprot.org/uniprot/O57963 O57963]
+
{{#set: common name=superoxide radicals degradation}}
−
** [http://www.uniprot.org/uniprot/O51603 O51603]
+
{{#set: common name=removal of superoxide radicals}}
−
** [http://www.uniprot.org/uniprot/Q9JTT7 Q9JTT7]
+
{{#set: reaction found=2}}
−
** [http://www.uniprot.org/uniprot/O83650 O83650]
+
{{#set: total reaction=2}}
−
** [http://www.uniprot.org/uniprot/Q9X231 Q9X231]
+
{{#set: completion rate=100.0}}
−
** [http://www.uniprot.org/uniprot/P43825 P43825]
+
−
** [http://www.uniprot.org/uniprot/Q9ZDF8 Q9ZDF8]
+
−
** [http://www.uniprot.org/uniprot/O84786 O84786]
+
−
** [http://www.uniprot.org/uniprot/Q9Z6X5 Q9Z6X5]
+
−
** [http://www.uniprot.org/uniprot/Q9CII7 Q9CII7]
+
−
** [http://www.uniprot.org/uniprot/P56126 P56126]
+
−
** [http://www.uniprot.org/uniprot/Q9ZMP8 Q9ZMP8]
+
−
** [http://www.uniprot.org/uniprot/O67258 O67258]
+
−
** [http://www.uniprot.org/uniprot/O84002 O84002]
+
−
** [http://www.uniprot.org/uniprot/Q9RHV9 Q9RHV9]
+
−
** [http://www.uniprot.org/uniprot/P32048 P32048]
+
−
** [http://www.uniprot.org/uniprot/P37879 P37879]
+
−
** [http://www.uniprot.org/uniprot/Q48986 Q48986]
+
−
** [http://www.uniprot.org/uniprot/P0A8N7 P0A8N7]
+
−
** [http://www.uniprot.org/uniprot/P37477 P37477]
+
−
** [http://www.uniprot.org/uniprot/P75500 P75500]
+
−
** [http://www.uniprot.org/uniprot/P95970 P95970]
+
−
** [http://www.uniprot.org/uniprot/P73443 P73443]
+
−
** [http://www.uniprot.org/uniprot/P15180 P15180]
+
−
** [http://www.uniprot.org/uniprot/P0A8N3 P0A8N3]
+
−
** [http://www.uniprot.org/uniprot/P0A8N5 P0A8N5]
+
−
** [http://www.uniprot.org/uniprot/Q43776 Q43776]
+
−
** [http://www.uniprot.org/uniprot/O74059 O74059]
+
−
** [http://www.uniprot.org/uniprot/O30522 O30522]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=lysine--trna_ligase}}
+
−
{{#set: ec number=EC-6.1.1.6}}
+
−
{{#set: gene associated=Tiso_gene_16635|Tiso_gene_6705}}
+
−
{{#set: in pathway=TRNA-CHARGING-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 19:09, 21 March 2018

Pathway DETOX1-PWY

  • taxonomic range:
  • common name:
    • superoxide radicals degradation
  • Synonym(s):
    • removal of superoxide radicals

Reaction(s) found

2 reactions found over 2 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=DETOX1-PWY&oldid=39874"