Difference between revisions of "LYSINE--TRNA-LIGASE-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-11400 CPD-11400] == * smiles: ** C(=O)([O-])C([N+])CC1(=CC(I)=C(C(I)=C1)OC3(C=CC(OC2(OC(C(=...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSINE--TRNA-LIGASE-RXN LYSINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-11400 CPD-11400] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSINE--TRNA-LIGASE-RXN LYSINE--TRNA-LIGASE-RXN] ==
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* smiles:
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* direction:
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** C(=O)([O-])C([N+])CC1(=CC(I)=C(C(I)=C1)OC3(C=CC(OC2(OC(C(=O)[O-])C(O)C(O)C(O)2))=C(I)C=3))
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=YYFGGGCINNGOLE-ZDXOGFQLSA-M
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* common name:
 
* common name:
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** 3,5,3'-triiodo-L-thyronine phenolic β-D-glucuronide
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** lysine--trna_ligase
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* molecular weight:
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* ec number:
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** 826.095   
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** [http://enzyme.expasy.org/EC/6.1.1.6 EC-6.1.1.6]
 
* Synonym(s):
 
* Synonym(s):
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** triiodothyronine glucuronide
 
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** beta-D-glucopyranosiduronic acid, 4-(4-(2-amino-2-carboxyethyl)-2,6-diiodophenoxy)-2-iodophenyl, (S)-
 
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** T3G
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[RXN-10607]]
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** 1 [[ATP]][c] '''+''' 1 [[LYS]][c] '''+''' 1 [[LYS-tRNAs]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[Charged-LYS-tRNAs]][c] '''+''' 1 [[AMP]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 ATP[c] '''+''' 1 L-lysine[c] '''+''' 1 a tRNAlys[c] '''=>''' 1 diphosphate[c] '''+''' 1 an L-lysyl-[tRNAlys][c] '''+''' 1 AMP[c]
 +
 
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_6705]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_16635]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=90659063 90659063]
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** [http://www.genome.jp/dbget-bin/www_bget?R03658 R03658]
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{{#set: smiles=C(=O)([O-])C([N+])CC1(=CC(I)=C(C(I)=C1)OC3(C=CC(OC2(OC(C(=O)[O-])C(O)C(O)C(O)2))=C(I)C=3))}}
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* UNIPROT:
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{{#set: inchi key=InChIKey=YYFGGGCINNGOLE-ZDXOGFQLSA-M}}
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** [http://www.uniprot.org/uniprot/P41258 P41258]
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{{#set: common name=3,5,3'-triiodo-L-thyronine phenolic β-D-glucuronide}}
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** [http://www.uniprot.org/uniprot/P46861 P46861]
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{{#set: molecular weight=826.095    }}
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** [http://www.uniprot.org/uniprot/P47382 P47382]
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{{#set: common name=triiodothyronine glucuronide|beta-D-glucopyranosiduronic acid, 4-(4-(2-amino-2-carboxyethyl)-2,6-diiodophenoxy)-2-iodophenyl, (S)-|T3G}}
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** [http://www.uniprot.org/uniprot/O57963 O57963]
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{{#set: produced by=RXN-10607}}
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** [http://www.uniprot.org/uniprot/O51603 O51603]
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** [http://www.uniprot.org/uniprot/Q9JTT7 Q9JTT7]
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** [http://www.uniprot.org/uniprot/O83650 O83650]
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** [http://www.uniprot.org/uniprot/Q9X231 Q9X231]
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** [http://www.uniprot.org/uniprot/P43825 P43825]
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** [http://www.uniprot.org/uniprot/Q9ZDF8 Q9ZDF8]
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** [http://www.uniprot.org/uniprot/O84786 O84786]
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** [http://www.uniprot.org/uniprot/Q9Z6X5 Q9Z6X5]
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** [http://www.uniprot.org/uniprot/Q9CII7 Q9CII7]
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** [http://www.uniprot.org/uniprot/P56126 P56126]
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** [http://www.uniprot.org/uniprot/Q9ZMP8 Q9ZMP8]
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** [http://www.uniprot.org/uniprot/O67258 O67258]
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** [http://www.uniprot.org/uniprot/O84002 O84002]
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** [http://www.uniprot.org/uniprot/Q9RHV9 Q9RHV9]
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** [http://www.uniprot.org/uniprot/P32048 P32048]
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** [http://www.uniprot.org/uniprot/P37879 P37879]
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** [http://www.uniprot.org/uniprot/Q48986 Q48986]
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** [http://www.uniprot.org/uniprot/P0A8N7 P0A8N7]
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** [http://www.uniprot.org/uniprot/P37477 P37477]
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** [http://www.uniprot.org/uniprot/P75500 P75500]
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** [http://www.uniprot.org/uniprot/P95970 P95970]
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** [http://www.uniprot.org/uniprot/P73443 P73443]
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** [http://www.uniprot.org/uniprot/P15180 P15180]
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** [http://www.uniprot.org/uniprot/P0A8N3 P0A8N3]
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** [http://www.uniprot.org/uniprot/P0A8N5 P0A8N5]
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** [http://www.uniprot.org/uniprot/Q43776 Q43776]
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** [http://www.uniprot.org/uniprot/O74059 O74059]
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** [http://www.uniprot.org/uniprot/O30522 O30522]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=lysine--trna_ligase}}
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{{#set: ec number=EC-6.1.1.6}}
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{{#set: gene associated=Tiso_gene_6705|Tiso_gene_16635}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:09, 21 March 2018

Reaction LYSINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • lysine--trna_ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 L-lysine[c] + 1 a tRNAlys[c] => 1 diphosphate[c] + 1 an L-lysyl-[tRNAlys][c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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