Difference between revisions of "Tiso gene 19542"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7985 RXN-7985] == * direction: ** LEFT-TO-RIGHT * common name: ** violaxanthin de-epoxidase **...")
(Created page with "Category:Gene == Gene Tiso_gene_19542 == * right end position: ** 2036 * transcription direction: ** POSITIVE * left end position: ** 26 * centisome position: ** 1.1596788...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7985 RXN-7985] ==
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== Gene Tiso_gene_19542 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 2036
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* common name:
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* transcription direction:
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** violaxanthin de-epoxidase
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** POSITIVE
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** violaxanthin_de-_chloroplast
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* left end position:
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** violaxanthin_de-epoxidase
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** 26
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* centisome position:
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** 1.1596788   
 
* Synonym(s):
 
* Synonym(s):
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** VDE
 
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[GPPSYN-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[CPD1F-131]][c] '''+''' 1 [[ASCORBATE]][c] '''=>''' 1 [[L-DEHYDRO-ASCORBATE]][c] '''+''' 1 [[CPD1F-130]][c] '''+''' 1 [[WATER]][c]
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* With common name(s):
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** 1 H+[c] '''+''' 1 antheraxanthin[c] '''+''' 1 L-ascorbate[c] '''=>''' 1 L-dehydro-ascorbate[c] '''+''' 1 zeaxanthin[c] '''+''' 1 H2O[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_5666]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_1275]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_16523]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-5945]], zeaxanthin, antheraxanthin and violaxanthin interconversion: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5945 PWY-5945]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Reaction: [[R06284]]
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* Category: [[annotation]]
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** Source: [[orthology-synechocystis]]
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* Reaction: [[RXN-7663]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[RXN-7673]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-7674]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[RXN1F-66]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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== Pathways associated ==
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* [[PWY-7736]]
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* [[PWY-7764]]
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* [[PWY-6859]]
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* [[PWY-7709]]
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* [[PWY-7102]]
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* [[PWY-7182]]
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* [[PWY-7141]]
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* [[PWY-5123]]
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* [[PWY-5122]]
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* [[PWY-5064]]
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* [[PWY-6383]]
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* [[PWY-7659]]
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* [[PWY-5068]]
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* [[PWY-7410]]
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* [[PWY-5086]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=2036}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21800 21800]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=26}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07179 R07179]
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{{#set: centisome position=1.1596788    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=GPPSYN-RXN|R06284|RXN-7663|RXN-7673|RXN-7674|RXN1F-66}}
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{{#set: common name=violaxanthin de-epoxidase}}
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{{#set: pathway associated=PWY-7736|PWY-7764|PWY-6859|PWY-7709|PWY-7102|PWY-7182|PWY-7141|PWY-5123|PWY-5122|PWY-5064|PWY-6383|PWY-7659|PWY-5068|PWY-7410|PWY-5086}}
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{{#set: common name=violaxanthin_de-_chloroplast}}
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{{#set: common name=violaxanthin_de-epoxidase}}
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{{#set: common name=VDE}}
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{{#set: gene associated=Tiso_gene_5666|Tiso_gene_1275|Tiso_gene_16523}}
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{{#set: in pathway=PWY-5945}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:10, 21 March 2018

Gene Tiso_gene_19542

  • right end position:
    • 2036
  • transcription direction:
    • POSITIVE
  • left end position:
    • 26
  • centisome position:
    • 1.1596788
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_19542&oldid=39884"