Difference between revisions of "PWY-6987"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7985 RXN-7985] == * direction: ** LEFT-TO-RIGHT * common name: ** violaxanthin de-epoxidase **...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6987 PWY-6987] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Category:Reaction]]
+
[[Category:Pathway]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7985 RXN-7985] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6987 PWY-6987] ==
* direction:
+
* taxonomic range:
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
** violaxanthin de-epoxidase
+
** lipoate biosynthesis and incorporation III (Bacillus)
** violaxanthin_de-_chloroplast
+
** violaxanthin_de-epoxidase
+
 
* Synonym(s):
 
* Synonym(s):
** VDE
 
  
== Reaction Formula ==
+
== Reaction(s) found ==
* With identifiers:
+
'''2''' reactions found over '''3''' reactions in the full pathway
** 1 [[ASCORBATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD1F-131]][c] '''=>''' 1 [[CPD1F-130]][c] '''+''' 1 [[L-DEHYDRO-ASCORBATE]][c] '''+''' 1 [[WATER]][c]
+
* [[RXN-13037]]
* With common name(s):
+
** 2 associated gene(s):
** 1 L-ascorbate[c] '''+''' 1 H+[c] '''+''' 1 antheraxanthin[c] '''=>''' 1 zeaxanthin[c] '''+''' 1 L-dehydro-ascorbate[c] '''+''' 1 H2O[c]
+
*** [[Tiso_gene_4494]]
 
+
*** [[Tiso_gene_4493]]
== Genes associated with this reaction  ==
+
** 1 reconstruction source(s) associated:
Genes have been associated with this reaction based on different elements listed below.
+
*** [[annotation-in-silico_annotation]]
* [[Tiso_gene_16523]]
+
* [[RXN0-949]]
** IN-SILICO_ANNOTATION
+
** 2 associated gene(s):
***EC-NUMBER
+
*** [[Tiso_gene_8049]]
* [[Tiso_gene_1275]]
+
*** [[Tiso_gene_437]]
** IN-SILICO_ANNOTATION
+
** 1 reconstruction source(s) associated:
***EC-NUMBER
+
*** [[annotation-in-silico_annotation]]
* [[Tiso_gene_5666]]
+
== Reaction(s) not found ==
** IN-SILICO_ANNOTATION
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13036 RXN-13036]
***EC-NUMBER
+
** [[pantograph]]-[[esiliculosus]]
+
== Pathways  ==
+
* [[PWY-5945]], zeaxanthin, antheraxanthin and violaxanthin interconversion: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5945 PWY-5945]
+
** '''4''' reactions found over '''4''' reactions in the full pathway
+
== Reconstruction information  ==
+
* [[orthology]]:
+
** [[pantograph]]:
+
*** [[esiliculosus]]
+
* [[annotation]]:
+
** [[pathwaytools]]:
+
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
* RHEA:
+
{{#set: taxonomic range=TAX-2}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21800 21800]
+
{{#set: common name=lipoate biosynthesis and incorporation III (Bacillus)}}
* LIGAND-RXN:
+
{{#set: reaction found=2}}
** [http://www.genome.jp/dbget-bin/www_bget?R07179 R07179]
+
{{#set: total reaction=3}}
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: completion rate=67.0}}
{{#set: common name=violaxanthin de-epoxidase}}
+
{{#set: common name=violaxanthin_de-_chloroplast}}
+
{{#set: common name=violaxanthin_de-epoxidase}}
+
{{#set: common name=VDE}}
+
{{#set: gene associated=Tiso_gene_16523|Tiso_gene_1275|Tiso_gene_5666}}
+
{{#set: in pathway=PWY-5945}}
+
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=esiliculosus}}
+
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction source=in-silico_annotation}}
+

Latest revision as of 19:10, 21 March 2018

Pathway PWY-6987

  • taxonomic range:
  • common name:
    • lipoate biosynthesis and incorporation III (Bacillus)
  • Synonym(s):

Reaction(s) found

2 reactions found over 3 reactions in the full pathway

Reaction(s) not found

External links