Difference between revisions of "7KAPSYN-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7053 PWY-7053] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=7KAPSYN-RXN 7KAPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7053 PWY-7053] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=7KAPSYN-RXN 7KAPSYN-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3041 TAX-3041]
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* ec number:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3208 TAX-3208]
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** [http://enzyme.expasy.org/EC/2.3.1.47 EC-2.3.1.47]
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* common name:
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** docosahexaenoate biosynthesis I (lower eukaryotes)
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''4''' reactions found over '''7''' reactions in the full pathway
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* With identifiers:
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* [[RXN-13442]]
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** 1 [[PROTON]][c] '''+''' 1 [[CPD-558]][c] '''+''' 1 [[L-ALPHA-ALANINE]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[8-AMINO-7-OXONONANOATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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** 0 associated gene:
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* With common name(s):
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** 2 reconstruction source(s) associated:
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** 1 H+[c] '''+''' 1 pimeloyl-CoA[c] '''+''' 1 L-alanine[c] '''=>''' 1 coenzyme A[c] '''+''' 1 8-amino-7-oxononanoate[c] '''+''' 1 CO2[c]
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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== Genes associated with this reaction  ==
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* [[RXN-13443]]
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Genes have been associated with this reaction based on different elements listed below.
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** 3 associated gene(s):
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* Gene: [[Tiso_gene_3555]]
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*** [[Tiso_gene_9871]]
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** Source: [[orthology-athaliana]]
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*** [[Tiso_gene_13083]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_9885]]
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== Pathways  ==
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** 3 reconstruction source(s) associated:
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* [[PWY-6578]], 8-amino-7-oxononanoate biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6578 PWY-6578]
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*** [[annotation-experimental_annotation]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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*** [[annotation-in-silico_annotation]]
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== Reconstruction information  ==
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*** [[orthology-esiliculosus]]
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* Category: [[orthology]]
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* [[RXN-13444]]
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** Source: [[orthology-athaliana]]
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** 0 associated gene:
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*** Tool: [[pantograph]]
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** 2 reconstruction source(s) associated:
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** Tool: [[pantograph]]
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*** [[annotation-experimental_annotation]]
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* [[RXN-13445]]
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** 0 associated gene:
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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−
*** [[annotation-experimental_annotation]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12797 RXN-12797]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16102 RXN-16102]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-17688 RXN-17688]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-2759}}
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* RHEA:
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{{#set: taxonomic range=TAX-3041}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20712 20712]
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{{#set: taxonomic range=TAX-3208}}
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* LIGAND-RXN:
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{{#set: common name=docosahexaenoate biosynthesis I (lower eukaryotes)}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03210 R03210]
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{{#set: reaction found=4}}
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* UNIPROT:
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{{#set: total reaction=7}}
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** [http://www.uniprot.org/uniprot/Q58694 Q58694]
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{{#set: completion rate=57.0}}
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** [http://www.uniprot.org/uniprot/O84782 O84782]
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** [http://www.uniprot.org/uniprot/Q9Z6Y3 Q9Z6Y3]
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** [http://www.uniprot.org/uniprot/P0A4X4 P0A4X4]
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** [http://www.uniprot.org/uniprot/Q9K0U0 Q9K0U0]
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** [http://www.uniprot.org/uniprot/Q9PLE6 Q9PLE6]
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** [http://www.uniprot.org/uniprot/P44422 P44422]
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** [http://www.uniprot.org/uniprot/O25320 O25320]
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** [http://www.uniprot.org/uniprot/P53556 P53556]
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** [http://www.uniprot.org/uniprot/Q9PIJ3 Q9PIJ3]
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** [http://www.uniprot.org/uniprot/O66875 O66875]
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** [http://www.uniprot.org/uniprot/Q9ZLN3 Q9ZLN3]
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** [http://www.uniprot.org/uniprot/Q9Z6L6 Q9Z6L6]
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** [http://www.uniprot.org/uniprot/Q9JT28 Q9JT28]
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** [http://www.uniprot.org/uniprot/P22806 P22806]
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** [http://www.uniprot.org/uniprot/P45487 P45487]
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** [http://www.uniprot.org/uniprot/P74770 P74770]
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** [http://www.uniprot.org/uniprot/P12998 P12998]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-2.3.1.47}}
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{{#set: gene associated=Tiso_gene_3555}}
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{{#set: in pathway=PWY-6578}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}

Latest revision as of 20:10, 21 March 2018

Reaction 7KAPSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6578, 8-amino-7-oxononanoate biosynthesis III: PWY-6578
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=7KAPSYN-RXN&oldid=39933"