Difference between revisions of "RXN-13451"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17736 RXN-17736] == * direction: ** LEFT-TO-RIGHT * common name: ** abhydrolase_domain-containi...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13451 RXN-13451] == * direction: ** LEFT-TO-RIGHT * common name: ** acyl-coenzyme_a_oxidase **...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17736 RXN-17736] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13451 RXN-13451] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** abhydrolase_domain-containing_protein_4-like
+
** acyl-coenzyme_a_oxidase
 +
** acyl-_dehydrogenase
 
** ORF
 
** ORF
 +
** acyl-CoA_dehydrogenase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.1.1.4 EC-3.1.1.4]
+
** [http://enzyme.expasy.org/EC/1.3.8.9 EC-1.3.8.9]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[PLASMENYLCHOLINE]][c] '''=>''' 1 [[CPD-563]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Long-Chain-Fatty-Acids]][c]
+
** 1 [[ETF-Oxidized]][c] '''+''' 1 [[Very-long-Chain-234-Saturated-acyl-CoAs]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[Very-Long-Chain-Trans-23-Dehydroacyl-CoA]][c] '''+''' 1 [[ETF-Reduced]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 a plasmenylcholine[c] '''=>''' 1 a 1-(1-alkenyl)-sn-glycero-3-phosphocholine[c] '''+''' 1 H+[c] '''+''' 1 a long-chain fatty acid[c]
+
** 1 an oxidized electron-transfer flavoprotein[c] '''+''' 1 a very-long-chain 2,3,4-saturated fatty acyl CoA[c] '''+''' 1 H+[c] '''=>''' 1 a very-long-chain trans-2,3-dehydroacyl-CoA[c] '''+''' 1 a reduced electron-transfer flavoprotein[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_15046]]
+
* Gene: [[Tiso_gene_5991]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_15047]]
+
* Gene: [[Tiso_gene_883]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-experimental_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_12959]]
+
* Gene: [[Tiso_gene_17967]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_12960]]
+
* Gene: [[Tiso_gene_6475]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_18566]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_16631]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7783]], plasmalogen degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7783 PWY-7783]
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-experimental_annotation]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=abhydrolase_domain-containing_protein_4-like}}
+
{{#set: common name=acyl-coenzyme_a_oxidase}}
 +
{{#set: common name=acyl-_dehydrogenase}}
 
{{#set: common name=ORF}}
 
{{#set: common name=ORF}}
−
{{#set: ec number=EC-3.1.1.4}}
+
{{#set: common name=acyl-CoA_dehydrogenase}}
−
{{#set: gene associated=Tiso_gene_15046|Tiso_gene_15047|Tiso_gene_12959|Tiso_gene_12960}}
+
{{#set: ec number=EC-1.3.8.9}}
−
{{#set: in pathway=PWY-7783}}
+
{{#set: gene associated=Tiso_gene_5991|Tiso_gene_883|Tiso_gene_17967|Tiso_gene_6475|Tiso_gene_18566|Tiso_gene_16631}}
 +
{{#set: in pathway=}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=in-silico_annotation}}
 

Latest revision as of 20:10, 21 March 2018

Reaction RXN-13451

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • acyl-coenzyme_a_oxidase
    • acyl-_dehydrogenase
    • ORF
    • acyl-CoA_dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-13451&oldid=39977"