Difference between revisions of "Tiso gene 15422"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-66 RXN1F-66] == * direction: ** REVERSIBLE * common name: ** chlorophyll_chloroplastic * ec n...")
 
(Created page with "Category:Gene == Gene Tiso_gene_15422 == * right end position: ** 4726 * transcription direction: ** POSITIVE * left end position: ** 3274 * centisome position: ** 65.1153...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-66 RXN1F-66] ==
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== Gene Tiso_gene_15422 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 4726
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* common name:
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* transcription direction:
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** chlorophyll_chloroplastic
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/2.5.1.62 EC-2.5.1.62]
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** 3274
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* centisome position:
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** 65.11536   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3.3.2.8-RXN]]
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** 1 [[PHYTYL-PYROPHOSPHATE]][c] '''+''' 1 [[CHLOROPHYLLIDE-A]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[PPI]][c] '''+''' 1 [[CHLOROPHYLL-A]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 phytyl diphosphate[c] '''+''' 1 chlorophyllide a[c] '''+''' 1 H+[c] '''<=>''' 1 diphosphate[c] '''+''' 1 chlorophyll a[c]
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* Reaction: [[RXN-9412]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-9413]]
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* [[Tiso_gene_19542]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: automated-name-match
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***EC-NUMBER
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* Reaction: [[RXN-9464]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[creinhardtii]]
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*** Assignment: automated-name-match
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== Pathways  ==
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== Pathways associated ==
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* [[PWY-5068]], chlorophyll cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5068 PWY-5068]
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* [[PWY-5923]]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5924]]
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* [[PWY-7764]], chlorophyll a biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7764 PWY-7764]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-5086]], chlorophyll a biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5086 PWY-5086]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=4726}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17317 17317]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=3274}}
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** [http://www.genome.jp/dbget-bin/www_bget?R06284 R06284]
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{{#set: centisome position=65.11536    }}
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{{#set: direction=REVERSIBLE}}
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{{#set: reaction associated=3.3.2.8-RXN|RXN-9412|RXN-9413|RXN-9464}}
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{{#set: common name=chlorophyll_chloroplastic}}
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{{#set: pathway associated=PWY-5923|PWY-5924}}
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{{#set: ec number=EC-2.5.1.62}}
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{{#set: gene associated=Tiso_gene_19542}}
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{{#set: in pathway=PWY-5068|PWY-7764|PWY-5086}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 19:11, 21 March 2018

Gene Tiso_gene_15422

  • right end position:
    • 4726
  • transcription direction:
    • POSITIVE
  • left end position:
    • 3274
  • centisome position:
    • 65.11536
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_15422&oldid=40026"