Difference between revisions of "Tiso gene 2717"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14903 RXN-14903] == * direction: ** LEFT-TO-RIGHT * common name: ** proline_dehydrogenase * ec...")
(Created page with "Category:Gene == Gene Tiso_gene_2717 == * right end position: ** 3957 * transcription direction: ** POSITIVE * left end position: ** 468 * centisome position: ** 2.526316...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14903 RXN-14903] ==
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== Gene Tiso_gene_2717 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 3957
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* common name:
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* transcription direction:
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** proline_dehydrogenase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/1.5.5.2 EC-1.5.5.2]
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** 468
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* centisome position:
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** 2.526316   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[DIMETHYLGLYCINE-DEHYDROGENASE-RXN]]
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** 1 [[PRO]][c] '''+''' 1 [[ETR-Quinones]][c] '''=>''' 1 [[L-DELTA1-PYRROLINE_5-CARBOXYLATE]][c] '''+''' 1 [[ETR-Quinols]][c] '''+''' 1 [[PROTON]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 L-proline[c] '''+''' 1 an electron-transfer quinone[c] '''=>''' 1 (S)-1-pyrroline-5-carboxylate[c] '''+''' 1 an electron-transfer quinol[c] '''+''' 1 H+[c]
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* Reaction: [[GCVT-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN66-576]]
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* [[Tiso_gene_18825]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: automated-name-match
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***EC-NUMBER
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== Pathways associated ==
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* [[Tiso_gene_18826]]
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* [[PWY-3661]]
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** IN-SILICO_ANNOTATION
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* [[GLYCLEAV-PWY]]
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***EC-NUMBER
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* [[PWY-3661-1]]
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* [[Tiso_gene_9762]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PROUT-PWY]], L-proline degradation: [http://metacyc.org/META/NEW-IMAGE?object=PROUT-PWY PROUT-PWY]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6922]], L-Nδ-acetylornithine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6922 PWY-6922]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-5737]], (5R)-carbapenem carboxylate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5737 PWY-5737]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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* [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=3957}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01253 R01253]
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{{#set: transcription direction=POSITIVE}}
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* UNIPROT:
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{{#set: left end position=468}}
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** [http://www.uniprot.org/uniprot/P95629 P95629]
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{{#set: centisome position=2.526316    }}
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** [http://www.uniprot.org/uniprot/Q59206 Q59206]
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{{#set: reaction associated=DIMETHYLGLYCINE-DEHYDROGENASE-RXN|GCVT-RXN|RXN66-576}}
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** [http://www.uniprot.org/uniprot/P74275 P74275]
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{{#set: pathway associated=PWY-3661|GLYCLEAV-PWY|PWY-3661-1}}
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** [http://www.uniprot.org/uniprot/P10503 P10503]
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** [http://www.uniprot.org/uniprot/Q51873 Q51873]
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** [http://www.uniprot.org/uniprot/Q59426 Q59426]
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** [http://www.uniprot.org/uniprot/O24897 O24897]
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** [http://www.uniprot.org/uniprot/Q9K0Z9 Q9K0Z9]
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** [http://www.uniprot.org/uniprot/Q9JSY1 Q9JSY1]
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** [http://www.uniprot.org/uniprot/P09546 P09546]
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** [http://www.uniprot.org/uniprot/Q9PMG0 Q9PMG0]
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** [http://www.uniprot.org/uniprot/Q9ZN12 Q9ZN12]
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** [http://www.uniprot.org/uniprot/Q04499 Q04499]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=proline_dehydrogenase}}
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{{#set: ec number=EC-1.5.5.2}}
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{{#set: gene associated=Tiso_gene_18825|Tiso_gene_18826|Tiso_gene_9762}}
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{{#set: in pathway=PROUT-PWY|PWY-6922|PWY-5737|CITRULBIO-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 20:11, 21 March 2018

Gene Tiso_gene_2717

  • right end position:
    • 3957
  • transcription direction:
    • POSITIVE
  • left end position:
    • 468
  • centisome position:
    • 2.526316
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_2717&oldid=40067"