Difference between revisions of "GLYCINE--TRNA-LIGASE-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_3732 == * left end position: ** 525 * transcription direction: ** POSITIVE * right end position: ** 3733 * centisome position: ** 2.1731932...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE--TRNA-LIGASE-RXN GLYCINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_3732 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE--TRNA-LIGASE-RXN GLYCINE--TRNA-LIGASE-RXN] ==
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* left end position:
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* direction:
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** 525
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** glycyl-trna_synthetase
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* right end position:
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** ORF
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** 3733
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/6.1.1.14 EC-6.1.1.14]
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** 2.1731932   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[ACETYLHOMOSER-CYS-RXN]]
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* With identifiers:
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** [[pantograph]]-[[creinhardtii]]
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** 1 [[ATP]][c] '''+''' 1 [[GLY]][c] '''+''' 1 [[GLY-tRNAs]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[Charged-GLY-tRNAs]][c] '''+''' 1 [[AMP]][c]
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* [[ACHMSSELCYSL]]
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* With common name(s):
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** [[pantograph]]-[[creinhardtii]]
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** 1 ATP[c] '''+''' 1 glycine[c] '''+''' 1 a tRNAgly[c] '''=>''' 1 diphosphate[c] '''+''' 1 a glycyl-[tRNAgly][c] '''+''' 1 AMP[c]
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* [[ACHMSSELCYSLh]]
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** [[pantograph]]-[[creinhardtii]]
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== Genes associated with this reaction  ==
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* [[CYSTATHIONINE-BETA-SYNTHASE-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** [[pantograph]]-[[creinhardtii]]
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* Gene: [[Tiso_gene_3788]]
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* [[CYSTHIOCYS-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: EC-NUMBER
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** [[pantograph]]-[[creinhardtii]]
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** Source: [[annotation-experimental_annotation]]
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* [[HOMOSERDEAM-RXN]]
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*** Assignment: EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* Gene: [[Tiso_gene_14742]]
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* [[LCYSDESULF-RXN]]
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** Source: [[annotation-experimental_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: EC-NUMBER
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** [[pantograph]]-[[creinhardtii]]
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* Gene: [[Tiso_gene_14743]]
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* [[METBALT-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[athaliana]]
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*** Assignment: EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[O-SUCCHOMOSERLYASE-RXN]]
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** [[pantograph]]-[[athaliana]]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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** [[pantograph]]-[[esiliculosus]]
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== Reconstruction information  ==
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** [[pantograph]]-[[creinhardtii]]
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* Category: [[orthology]]
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* [[RXN-12728]]
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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*** Tool: [[pantograph]]
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** [[pantograph]]-[[creinhardtii]]
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* Category: [[annotation]]
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* [[RXN-12729]]
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** Source: [[annotation-in-silico_annotation]]
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** in-silico_annotation
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*** Tool: [[pathwaytools]]
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***ec-number
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** Source: [[annotation-experimental_annotation]]
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** experimental_annotation
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*** Tool: [[pathwaytools]]
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***ec-number
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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* [[RXN-14048]]
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-14049]]
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-15128]]
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-15129]]
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-15130]]
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-15131]]
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** experimental_annotation
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***automated-name-match
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* [[RXN-15137]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-9384]]
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** [[pantograph]]-[[creinhardtii]]
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* [[SUCHMSSELCYSL]]
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** [[pantograph]]-[[creinhardtii]]
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−
* [[SUCHMSSELCYSLh]]
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** [[pantograph]]-[[creinhardtii]]
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−
* [[SULFOCYS-RXN]]
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** [[pantograph]]-[[athaliana]]
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−
** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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−
** [[pantograph]]-[[creinhardtii]]
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== Pathways associated ==
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* [[PWY-5344]]
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* [[PWY-6936]]
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* [[PWY-I9]]
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* [[LCYSDEG-PWY]]
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* [[HOMOSER-METSYN-PWY]]
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* [[PWY-702]]
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* [[HOMOCYSDEGR-PWY]]
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* [[PWY-801]]
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== External links  ==
 
== External links  ==
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{{#set: left end position=525}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16013 16013]
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{{#set: right end position=3733}}
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* LIGAND-RXN:
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{{#set: centisome position=2.1731932    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R03654 R03654]
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{{#set: reaction associated=ACETYLHOMOSER-CYS-RXN|ACHMSSELCYSL|ACHMSSELCYSLh|CYSTATHIONINE-BETA-SYNTHASE-RXN|CYSTHIOCYS-RXN|HOMOSERDEAM-RXN|LCYSDESULF-RXN|METBALT-RXN|O-SUCCHOMOSERLYASE-RXN|RXN-12728|RXN-12729|RXN-14048|RXN-14049|RXN-15128|RXN-15129|RXN-15130|RXN-15131|RXN-15137|RXN-9384|SUCHMSSELCYSL|SUCHMSSELCYSLh|SULFOCYS-RXN}}
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* UNIPROT:
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{{#set: pathway associated=PWY-5344|PWY-6936|PWY-I9|LCYSDEG-PWY|HOMOSER-METSYN-PWY|PWY-702|HOMOCYSDEGR-PWY|PWY-801}}
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** [http://www.uniprot.org/uniprot/P41250 P41250]
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** [http://www.uniprot.org/uniprot/P54380 P54380]
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** [http://www.uniprot.org/uniprot/Q9ZCB1 Q9ZCB1]
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** [http://www.uniprot.org/uniprot/P43822 P43822]
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** [http://www.uniprot.org/uniprot/P54381 P54381]
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** [http://www.uniprot.org/uniprot/O51344 O51344]
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** [http://www.uniprot.org/uniprot/Q46371 Q46371]
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** [http://www.uniprot.org/uniprot/Q9ZCB0 Q9ZCB0]
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** [http://www.uniprot.org/uniprot/Q9WY59 Q9WY59]
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** [http://www.uniprot.org/uniprot/P43821 P43821]
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** [http://www.uniprot.org/uniprot/O83678 O83678]
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** [http://www.uniprot.org/uniprot/Q9WY60 Q9WY60]
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** [http://www.uniprot.org/uniprot/Q9PPK3 Q9PPK3]
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** [http://www.uniprot.org/uniprot/P56454 P56454]
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** [http://www.uniprot.org/uniprot/Q9PN63 Q9PN63]
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** [http://www.uniprot.org/uniprot/Q57681 Q57681]
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** [http://www.uniprot.org/uniprot/P67029 P67029]
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** [http://www.uniprot.org/uniprot/O67081 O67081]
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** [http://www.uniprot.org/uniprot/O67898 O67898]
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** [http://www.uniprot.org/uniprot/O59235 O59235]
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** [http://www.uniprot.org/uniprot/P47493 P47493]
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** [http://www.uniprot.org/uniprot/Q9ZKP1 Q9ZKP1]
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** [http://www.uniprot.org/uniprot/Q9JW67 Q9JW67]
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** [http://www.uniprot.org/uniprot/P56453 P56453]
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** [http://www.uniprot.org/uniprot/O27874 O27874]
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** [http://www.uniprot.org/uniprot/Q9ZKM9 Q9ZKM9]
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** [http://www.uniprot.org/uniprot/Q9CGK0 Q9CGK0]
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** [http://www.uniprot.org/uniprot/P38088 P38088]
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** [http://www.uniprot.org/uniprot/Q06817 Q06817]
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** [http://www.uniprot.org/uniprot/Q51114 Q51114]
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** [http://www.uniprot.org/uniprot/P75425 P75425]
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** [http://www.uniprot.org/uniprot/Q55716 Q55716]
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** [http://www.uniprot.org/uniprot/P00960 P00960]
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** [http://www.uniprot.org/uniprot/P00961 P00961]
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** [http://www.uniprot.org/uniprot/Q8L785 Q8L785]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=glycyl-trna_synthetase}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-6.1.1.14}}
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{{#set: gene associated=Tiso_gene_3788|Tiso_gene_14742|Tiso_gene_14743}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:12, 21 March 2018

Reaction GLYCINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • glycyl-trna_synthetase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 glycine[c] + 1 a tRNAgly[c] => 1 diphosphate[c] + 1 a glycyl-[tRNAgly][c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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