Difference between revisions of "Tiso gene 14360"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCSEMIALDDEHYDROG-RXN SUCCSEMIALDDEHYDROG-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [...")
(Created page with "Category:Gene == Gene Tiso_gene_14360 == * right end position: ** 4599 * transcription direction: ** POSITIVE * left end position: ** 2962 * centisome position: ** 51.9740...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCSEMIALDDEHYDROG-RXN SUCCSEMIALDDEHYDROG-RXN] ==
+
== Gene Tiso_gene_14360 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 4599
−
* ec number:
+
* transcription direction:
−
** [http://enzyme.expasy.org/EC/1.2.1.79 EC-1.2.1.79]
+
** POSITIVE
 +
* left end position:
 +
** 2962
 +
* centisome position:
 +
** 51.97403   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[RXN-15556]]
−
** 1 [[WATER]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[SUCC-S-ALD]][c] '''=>''' 2 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[SUC]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: ec-number
−
** 1 H2O[c] '''+''' 1 NADP+[c] '''+''' 1 succinate semialdehyde[c] '''=>''' 2 H+[c] '''+''' 1 NADPH[c] '''+''' 1 succinate[c]
+
* Reaction: [[UBIQUITIN--PROTEIN-LIGASE-RXN]]
−
 
+
** Source: [[annotation-in-silico_annotation]]
−
== Genes associated with this reaction  ==
+
*** Assignment: ec-number
−
Genes have been associated with this reaction based on different elements listed below.
+
== Pathways associated ==
−
* [[Tiso_gene_6952]]
+
* [[PWY-7511]]
−
** [[pantograph]]-[[synechocystis]]
+
−
== Pathways  ==
+
−
* [[PWY-6537]], 4-aminobutanoate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6537 PWY-6537]
+
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
−
* [[3-HYDROXYPHENYLACETATE-DEGRADATION-PWY]], 4-hydroxyphenylacetate degradation: [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYPHENYLACETATE-DEGRADATION-PWY 3-HYDROXYPHENYLACETATE-DEGRADATION-PWY]
+
−
** '''2''' reactions found over '''8''' reactions in the full pathway
+
−
* [[PWY-6993]], nicotine degradation II (pyrrolidine pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6993 PWY-6993]
+
−
** '''2''' reactions found over '''11''' reactions in the full pathway
+
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
+
−
** '''9''' reactions found over '''11''' reactions in the full pathway
+
−
* [[P181-PWY]], nicotine degradation I (pyridine pathway): [http://metacyc.org/META/NEW-IMAGE?object=P181-PWY P181-PWY]
+
−
** '''2''' reactions found over '''17''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-synechocystis]]
+
−
*** Tool: [[pantograph]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=4599}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13213 13213]
+
{{#set: transcription direction=POSITIVE}}
−
* LIGAND-RXN:
+
{{#set: left end position=2962}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00714 R00714]
+
{{#set: centisome position=51.97403    }}
−
* UNIPROT:
+
{{#set: reaction associated=RXN-15556|UBIQUITIN--PROTEIN-LIGASE-RXN}}
−
** [http://www.uniprot.org/uniprot/Q9JTN7 Q9JTN7]
+
{{#set: pathway associated=PWY-7511}}
−
** [http://www.uniprot.org/uniprot/P25526 P25526]
+
−
** [http://www.uniprot.org/uniprot/O85997 O85997]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: ec number=EC-1.2.1.79}}
+
−
{{#set: gene associated=Tiso_gene_6952}}
+
−
{{#set: in pathway=PWY-6537|3-HYDROXYPHENYLACETATE-DEGRADATION-PWY|PWY-6993|P105-PWY|P181-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction source=orthology-synechocystis}}
+
−
{{#set: reconstruction tool=pantograph}}
+

Latest revision as of 19:12, 21 March 2018

Gene Tiso_gene_14360

  • right end position:
    • 4599
  • transcription direction:
    • POSITIVE
  • left end position:
    • 2962
  • centisome position:
    • 51.97403
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_14360&oldid=40131"