Difference between revisions of "RXN-5424"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6405 PWY-6405] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-8782 TAX-87...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5424 RXN-5424] == * direction: ** LEFT-TO-RIGHT * common name: ** indole-3-glycol dehydrogenase...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6405 PWY-6405] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5424 RXN-5424] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-8782 TAX-8782]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-40674 TAX-40674]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33083 TAX-33083]
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* common name:
 
* common name:
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** Rapoport-Luebering glycolytic shunt
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** indole-3-glycol dehydrogenase
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** polyketide_synthase
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** ORF
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* ec number:
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** [http://enzyme.expasy.org/EC/1.1.1.1 EC-1.1.1.1]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''1''' reactions found over '''3''' reactions in the full pathway
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* With identifiers:
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* [[RXN-15511]]
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** 1 [[PROTON]][c] '''+''' 1 [[3-INDOLYLGLYCOLALDEHYDE]][c] '''+''' 1 [[NADH]][c] '''=>''' 1 [[INDOLE-3-GLYCOL]][c] '''+''' 1 [[NAD]][c]
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** 8 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_14530]]
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** 1 H+[c] '''+''' 1 indole-3-glycol aldehyde[c] '''+''' 1 NADH[c] '''=>''' 1 indole-3-glycol[c] '''+''' 1 NAD+[c]
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*** [[Tiso_gene_2365]]
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*** [[Tiso_gene_2841]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_14664]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_9923]]
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* Gene: [[Tiso_gene_6562]]
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*** [[Tiso_gene_7201]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_9922]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_16271]]
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* Gene: [[Tiso_gene_6563]]
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** 2 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_7649]]
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== Reaction(s) not found ==
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=BISPHOSPHOGLYCERATE-MUTASE-RXN BISPHOSPHOGLYCERATE-MUTASE-RXN]
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*** Assignment: EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11102 RXN-11102]
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* Gene: [[Tiso_gene_5424]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_5425]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PWY-3162]], L-tryptophan degradation V (side chain pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3162 PWY-3162]
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** '''2''' reactions found over '''13''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-8782}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-40674}}
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{{#set: common name=indole-3-glycol dehydrogenase}}
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{{#set: taxonomic range=TAX-33083}}
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{{#set: common name=polyketide_synthase}}
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{{#set: common name=Rapoport-Luebering glycolytic shunt}}
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{{#set: common name=ORF}}
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{{#set: reaction found=1}}
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{{#set: ec number=EC-1.1.1.1}}
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{{#set: total reaction=3}}
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{{#set: gene associated=Tiso_gene_6562|Tiso_gene_6563|Tiso_gene_7649|Tiso_gene_5424|Tiso_gene_5425}}
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{{#set: completion rate=33.0}}
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{{#set: in pathway=PWY-3162}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:12, 21 March 2018

Reaction RXN-5424

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • indole-3-glycol dehydrogenase
    • polyketide_synthase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-3162, L-tryptophan degradation V (side chain pathway): PWY-3162
    • 2 reactions found over 13 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-5424&oldid=40137"