Difference between revisions of "PWY-7254"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOSERDEAM-RXN HOMOSERDEAM-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.ex...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOSERDEAM-RXN HOMOSERDEAM-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254] ==
* direction:
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* taxonomic range:
** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
* ec number:
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* common name:
** [http://enzyme.expasy.org/EC/4.4.1.1 EC-4.4.1.1]
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** TCA cycle VII (acetate-producers)
 
* Synonym(s):
 
* Synonym(s):
 +
** tricarboxylic acid cycle
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** citric acid cycle
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** Krebs cycle
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** Szent-Gyorgyi-Krebs cycle
  
== Reaction Formula ==
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== Reaction(s) found ==
* With identifiers:
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'''5''' reactions found over '''9''' reactions in the full pathway
** 1 [[HOMO-SER]][c] '''=>''' 1 [[2-OXOBUTANOATE]][c] '''+''' 1 [[AMMONIUM]][c]
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* [[ACONITATEDEHYDR-RXN]]
* With common name(s):
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** 1 associated gene(s):
** 1 L-homoserine[c] '''=>''' 1 2-oxobutanoate[c] '''+''' 1 ammonium[c]
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*** [[Tiso_gene_13007]]
 
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** 3 reconstruction source(s) associated:
== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
* Gene: [[Tiso_gene_3732]]
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*** [[orthology-synechocystis]]
** Source: [[orthology-esiliculosus]]
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* [[ACONITATEHYDR-RXN]]
== Pathways  ==
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** 1 associated gene(s):
== Reconstruction information  ==
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*** [[Tiso_gene_13007]]
* Category: [[orthology]]
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** 2 reconstruction source(s) associated:
** Source: [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
*** Tool: [[pantograph]]
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*** [[annotation-experimental_annotation]]
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* [[CITSYN-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_18030]]
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*** [[Tiso_gene_9601]]
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*** [[Tiso_gene_9603]]
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*** [[Tiso_gene_9602]]
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** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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* [[FUMHYDR-RXN]]
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** 2 associated gene(s):
 +
*** [[Tiso_gene_3691]]
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*** [[Tiso_gene_6720]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[ISOCITDEH-RXN]]
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** 2 associated gene(s):
 +
*** [[Tiso_gene_18262]]
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*** [[Tiso_gene_10809]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=2OXOGLUTARATEDEH-RXN 2OXOGLUTARATEDEH-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=MALATE-DEHYDROGENASE-ACCEPTOR-RXN MALATE-DEHYDROGENASE-ACCEPTOR-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14971 RXN-14971]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8807 RXN-8807]
 
== External links  ==
 
== External links  ==
* RHEA:
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{{#set: taxonomic range=TAX-2}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24923 24923]
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{{#set: common name=TCA cycle VII (acetate-producers)}}
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=tricarboxylic acid cycle|citric acid cycle|Krebs cycle|Szent-Gyorgyi-Krebs cycle}}
{{#set: ec number=EC-4.4.1.1}}
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{{#set: reaction found=5}}
{{#set: gene associated=Tiso_gene_3732}}
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{{#set: total reaction=9}}
{{#set: in pathway=}}
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{{#set: completion rate=56.0}}
{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}
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Latest revision as of 19:12, 21 March 2018

Pathway PWY-7254

  • taxonomic range:
  • common name:
    • TCA cycle VII (acetate-producers)
  • Synonym(s):
    • tricarboxylic acid cycle
    • citric acid cycle
    • Krebs cycle
    • Szent-Gyorgyi-Krebs cycle

Reaction(s) found

5 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links