Difference between revisions of "ExchangeSeed CL-"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVIN-SYN-RXN RIBOFLAVIN-SYN-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enz...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ExchangeSeed_CL- ExchangeSeed_CL-] == * direction: ** REVERSIBLE * Synonym(s): == Reaction Formula...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVIN-SYN-RXN RIBOFLAVIN-SYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ExchangeSeed_CL- ExchangeSeed_CL-] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/2.5.1.9 EC-2.5.1.9]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2 [[DIMETHYL-D-RIBITYL-LUMAZINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE]][c] '''+''' 1 [[RIBOFLAVIN]][c]
+
** 1.0 [[CL-]][C-BOUNDARY] '''<=>''' 1.0 [[CL-]][e]
 
* With common name(s):
 
* With common name(s):
−
** 2 6,7-dimethyl-8-(1-D-ribityl)lumazine[c] '''+''' 1 H+[c] '''=>''' 1 5-amino-6-(D-ribitylamino)uracil[c] '''+''' 1 riboflavin[c]
+
** 1.0 chloride[C-BOUNDARY] '''<=>''' 1.0 chloride[e]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Tiso_gene_13686]]
 
−
** [[pantograph]]-[[athaliana]]
 
−
** [[pantograph]]-[[synechocystis]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
** [[pantograph]]-[[creinhardtii]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6167]], flavin biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6167 PWY-6167]
 
−
** '''4''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
+
* Category: [[manual]]
−
** Source: [[orthology-athaliana]]
+
** Source: [[manual-import_from_medium]]
−
*** Tool: [[pantograph]]
+
*** Comment: [[added to manage seeds from boundary to extracellular compartment]]
−
** Source: [[orthology-creinhardtii]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-synechocystis]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20772 20772]
+
{{#set: in pathway=}}
−
* LIGAND-RXN:
+
{{#set: reconstruction category=manual}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00066 R00066]
+
{{#set: reconstruction source=manual-import_from_medium}}
−
* UNIPROT:
+
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
−
** [http://www.uniprot.org/uniprot/P11998 P11998]
+
−
** [http://www.uniprot.org/uniprot/P16440 P16440]
+
−
** [http://www.uniprot.org/uniprot/Q9JUA6 Q9JUA6]
+
−
** [http://www.uniprot.org/uniprot/O24854 O24854]
+
−
** [http://www.uniprot.org/uniprot/O26237 O26237]
+
−
** [http://www.uniprot.org/uniprot/P66037 P66037]
+
−
** [http://www.uniprot.org/uniprot/Q9CGU8 Q9CGU8]
+
−
** [http://www.uniprot.org/uniprot/Q9YDC5 Q9YDC5]
+
−
** [http://www.uniprot.org/uniprot/Q9PN77 Q9PN77]
+
−
** [http://www.uniprot.org/uniprot/Q9CGU6 Q9CGU6]
+
−
** [http://www.uniprot.org/uniprot/P45273 P45273]
+
−
** [http://www.uniprot.org/uniprot/Q9PIB9 Q9PIB9]
+
−
** [http://www.uniprot.org/uniprot/O66529 O66529]
+
−
** [http://www.uniprot.org/uniprot/Q58584 Q58584]
+
−
** [http://www.uniprot.org/uniprot/O28856 O28856]
+
−
** [http://www.uniprot.org/uniprot/Q01994 Q01994]
+
−
** [http://www.uniprot.org/uniprot/P61714 P61714]
+
−
** [http://www.uniprot.org/uniprot/P0AFU8 P0AFU8]
+
−
** [http://www.uniprot.org/uniprot/P38145 P38145]
+
−
** [http://www.uniprot.org/uniprot/Q55532 Q55532]
+
−
** [http://www.uniprot.org/uniprot/P73527 P73527]
+
−
** [http://www.uniprot.org/uniprot/Q44680 Q44680]
+
−
** [http://www.uniprot.org/uniprot/Q44681 Q44681]
+
−
** [http://www.uniprot.org/uniprot/P50854 P50854]
+
−
** [http://www.uniprot.org/uniprot/P50856 P50856]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: ec number=EC-2.5.1.9}}
+
−
{{#set: gene associated=Tiso_gene_13686}}
+
−
{{#set: in pathway=PWY-6167|PWY-6168|RIBOSYN2-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction source=orthology-athaliana|orthology-creinhardtii|orthology-synechocystis|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph}}
+

Latest revision as of 19:12, 21 March 2018

Reaction ExchangeSeed_CL-

  • direction:
    • REVERSIBLE
  • Synonym(s):

Reaction Formula

  • With identifiers:
    • 1.0 CL-[C-BOUNDARY] <=> 1.0 CL-[e]
  • With common name(s):
    • 1.0 chloride[C-BOUNDARY] <=> 1.0 chloride[e]

Genes associated with this reaction

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=ExchangeSeed_CL-&oldid=40146"