Difference between revisions of "Tiso gene 18813"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-DEHYDROSPHINGANINE-REDUCTASE-RXN 3-DEHYDROSPHINGANINE-REDUCTASE-RXN] == * direction: ** LEFT-TO-R...")
(Created page with "Category:Gene == Gene Tiso_gene_18813 == * right end position: ** 2708 * transcription direction: ** NEGATIVE * left end position: ** 709 * centisome position: ** 25.51277...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-DEHYDROSPHINGANINE-REDUCTASE-RXN 3-DEHYDROSPHINGANINE-REDUCTASE-RXN] ==
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== Gene Tiso_gene_18813 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 2708
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* common name:
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* transcription direction:
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** 3-ketodihydrosphingosine_reductase
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** NEGATIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/1.1.1.102 EC-1.1.1.102]
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** 709
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* centisome position:
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** 25.512775   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[PEPTIDYLPROLYL-ISOMERASE-RXN]]
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** 1 [[DEHYDROSPHINGANINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[CPD-13612]][c] '''+''' 1 [[NADP]][c]
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* With common name(s):
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** 1 3-dehydrosphinganine[c] '''+''' 1 H+[c] '''+''' 1 NADPH[c] '''=>''' 1 D-erythro-sphinganine[c] '''+''' 1 NADP+[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_18518]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-creinhardtii]]
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== Pathways  ==
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* [[PWY-5129]], sphingolipid biosynthesis (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5129 PWY-5129]
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** '''3''' reactions found over '''13''' reactions in the full pathway
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* [[PWY3DJ-12]], ceramide de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY3DJ-12 PWY3DJ-12]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[SPHINGOLIPID-SYN-PWY]], sphingolipid biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=SPHINGOLIPID-SYN-PWY SPHINGOLIPID-SYN-PWY]
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** '''2''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=2708}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22640 22640]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=709}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02978 R02978]
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{{#set: centisome position=25.512775    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=PEPTIDYLPROLYL-ISOMERASE-RXN}}
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{{#set: common name=3-ketodihydrosphingosine_reductase}}
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{{#set: ec number=EC-1.1.1.102}}
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{{#set: gene associated=Tiso_gene_18518}}
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{{#set: in pathway=PWY-5129|PWY3DJ-12|SPHINGOLIPID-SYN-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:12, 21 March 2018

Gene Tiso_gene_18813

  • right end position:
    • 2708
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 709
  • centisome position:
    • 25.512775
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_18813&oldid=40177"