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− | [[Category:Reaction]] | + | [[Category:Gene]] |
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=F16BDEPHOS-RXN F16BDEPHOS-RXN] == | + | == Gene Tiso_gene_395 == |
− | * direction: | + | * right end position: |
− | ** LEFT-TO-RIGHT | + | ** 11990 |
− | * common name: | + | * transcription direction: |
− | ** fructose-_-bisphosphatase | + | ** POSITIVE |
− | ** chloroplast_fructose-_-bisphosphatase | + | * left end position: |
− | * ec number: | + | ** 8706 |
− | ** [http://enzyme.expasy.org/EC/3.1.3.11 EC-3.1.3.11] | + | * centisome position: |
| + | ** 25.525553 |
| * Synonym(s): | | * Synonym(s): |
| | | |
− | == Reaction Formula == | + | == Reactions associated == |
− | * With identifiers:
| + | * Reaction: [[RXN0-4261]] |
− | ** 1 [[WATER]][c] '''+''' 1 [[FRUCTOSE-16-DIPHOSPHATE]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[FRUCTOSE-6P]][c]
| + | |
− | * With common name(s):
| + | |
− | ** 1 H2O[c] '''+''' 1 fructose 1,6-bisphosphate[c] '''=>''' 1 phosphate[c] '''+''' 1 β-D-fructofuranose 6-phosphate[c]
| + | |
− | | + | |
− | == Genes associated with this reaction ==
| + | |
− | Genes have been associated with this reaction based on different elements listed below.
| + | |
− | * [[Tiso_gene_16502]] | + | |
− | ** [[pantograph]]-[[esiliculosus]]
| + | |
− | * [[Tiso_gene_8226]]
| + | |
− | ** IN-SILICO_ANNOTATION
| + | |
− | ***EC-NUMBER
| + | |
− | ** EXPERIMENTAL_ANNOTATION
| + | |
− | ***EC-NUMBER
| + | |
− | ** [[pantograph]]-[[athaliana]]
| + | |
− | ** [[pantograph]]-[[athaliana]]
| + | |
− | * [[Tiso_gene_9435]]
| + | |
− | ** IN-SILICO_ANNOTATION
| + | |
− | ***EC-NUMBER
| + | |
− | ** EXPERIMENTAL_ANNOTATION
| + | |
− | ***EC-NUMBER
| + | |
− | ** [[pantograph]]-[[athaliana]]
| + | |
− | ** [[pantograph]]-[[athaliana]]
| + | |
− | ** [[pantograph]]-[[esiliculosus]]
| + | |
− | ** [[pantograph]]-[[creinhardtii]]
| + | |
− | * [[Tiso_gene_4904]]
| + | |
− | ** [[pantograph]]-[[esiliculosus]]
| + | |
− | * [[Tiso_gene_3483]]
| + | |
− | ** IN-SILICO_ANNOTATION
| + | |
− | ***AUTOMATED-NAME-MATCH
| + | |
− | * [[Tiso_gene_15398]]
| + | |
− | ** IN-SILICO_ANNOTATION
| + | |
− | ***AUTOMATED-NAME-MATCH
| + | |
− | * [[Tiso_gene_4905]]
| + | |
− | ** [[pantograph]]-[[esiliculosus]]
| + | |
− | == Pathways ==
| + | |
− | * [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
| + | |
− | ** '''13''' reactions found over '''13''' reactions in the full pathway
| + | |
− | * [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis): [http://metacyc.org/META/NEW-IMAGE?object=SUCSYN-PWY SUCSYN-PWY]
| + | |
− | ** '''7''' reactions found over '''9''' reactions in the full pathway
| + | |
− | * [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
| + | |
− | ** '''12''' reactions found over '''12''' reactions in the full pathway
| + | |
− | * [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
| + | |
− | ** '''13''' reactions found over '''13''' reactions in the full pathway
| + | |
− | * [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
| + | |
− | ** '''11''' reactions found over '''11''' reactions in the full pathway
| + | |
− | * [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
| + | |
− | ** '''11''' reactions found over '''12''' reactions in the full pathway
| + | |
− | * [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
| + | |
− | ** '''10''' reactions found over '''12''' reactions in the full pathway
| + | |
− | == Reconstruction information ==
| + | |
− | * Category: [[orthology]]
| + | |
− | ** Source: [[orthology-athaliana]]
| + | |
− | *** Tool: [[pantograph]]
| + | |
− | ** Source: [[orthology-creinhardtii]]
| + | |
− | *** Tool: [[pantograph]]
| + | |
− | ** Source: [[orthology-esiliculosus]]
| + | |
− | *** Tool: [[pantograph]]
| + | |
− | * Category: [[manual]]
| + | |
− | ** Source: [[manual-primary_network]]
| + | |
− | * Category: [[annotation]]
| + | |
− | ** Source: [[annotation-in-silico_annotation]]
| + | |
− | *** Tool: [[pathwaytools]]
| + | |
| ** Source: [[annotation-experimental_annotation]] | | ** Source: [[annotation-experimental_annotation]] |
− | *** Tool: [[pathwaytools]] | + | *** Assignment: automated-name-match |
| + | == Pathways associated == |
| == External links == | | == External links == |
− | * RHEA:
| + | {{#set: right end position=11990}} |
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11064 11064]
| + | {{#set: transcription direction=POSITIVE}} |
− | * LIGAND-RXN:
| + | {{#set: left end position=8706}} |
− | ** [http://www.genome.jp/dbget-bin/www_bget?R00762 R00762]
| + | {{#set: centisome position=25.525553 }} |
− | * UNIPROT:
| + | {{#set: reaction associated=RXN0-4261}} |
− | ** [http://www.uniprot.org/uniprot/P09199 P09199]
| + | |
− | ** [http://www.uniprot.org/uniprot/P19112 P19112]
| + | |
− | ** [http://www.uniprot.org/uniprot/P22780 P22780]
| + | |
− | ** [http://www.uniprot.org/uniprot/P09467 P09467]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q9JUL6 Q9JUL6]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q9CIU9 Q9CIU9]
| + | |
− | ** [http://www.uniprot.org/uniprot/P09202 P09202]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q45597 Q45597]
| + | |
− | ** [http://www.uniprot.org/uniprot/P45292 P45292]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q9PP83 Q9PP83]
| + | |
− | ** [http://www.uniprot.org/uniprot/P19912 P19912]
| + | |
− | ** [http://www.uniprot.org/uniprot/P19911 P19911]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q9HGZ4 Q9HGZ4]
| + | |
− | ** [http://www.uniprot.org/uniprot/P09201 P09201]
| + | |
− | ** [http://www.uniprot.org/uniprot/P0A993 P0A993]
| + | |
− | ** [http://www.uniprot.org/uniprot/P00636 P00636]
| + | |
− | ** [http://www.uniprot.org/uniprot/P23014 P23014]
| + | |
− | ** [http://www.uniprot.org/uniprot/P27994 P27994]
| + | |
− | ** [http://www.uniprot.org/uniprot/P14766 P14766]
| + | |
− | ** [http://www.uniprot.org/uniprot/P09195 P09195]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q7M0S7 Q7M0S7]
| + | |
− | ** [http://www.uniprot.org/uniprot/P25851 P25851]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q05079 Q05079]
| + | |
− | ** [http://www.uniprot.org/uniprot/P46275 P46275]
| + | |
− | ** [http://www.uniprot.org/uniprot/P46276 P46276]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q43139 Q43139]
| + | |
− | ** [http://www.uniprot.org/uniprot/P00637 P00637]
| + | |
− | ** [http://www.uniprot.org/uniprot/O65827 O65827]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q42796 Q42796]
| + | |
− | ** [http://www.uniprot.org/uniprot/P46267 P46267]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q07204 Q07204]
| + | |
− | ** [http://www.uniprot.org/uniprot/P22418 P22418]
| + | |
− | {{#set: direction=LEFT-TO-RIGHT}} | + | |
− | {{#set: common name=fructose-_-bisphosphatase}} | + | |
− | {{#set: common name=chloroplast_fructose-_-bisphosphatase}} | + | |
− | {{#set: ec number=EC-3.1.3.11}} | + | |
− | {{#set: gene associated=Tiso_gene_16502|Tiso_gene_8226|Tiso_gene_9435|Tiso_gene_4904|Tiso_gene_3483|Tiso_gene_15398|Tiso_gene_4905}} | + | |
− | {{#set: in pathway=GLUCONEO-PWY|SUCSYN-PWY|GLYCOLYSIS|CALVIN-PWY|PWY-5484|P185-PWY|PWY66-399}}
| + | |
− | {{#set: reconstruction category=orthology|manual|annotation}}
| + | |
− | {{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|manual-primary_network|orthology-creinhardtii}}
| + | |
− | {{#set: reconstruction tool=pantograph|pathwaytools}}
| + | |