Difference between revisions of "Tiso gene 8801"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=F16BDEPHOS-RXN F16BDEPHOS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** fructose-_-bispho...")
(Created page with "Category:Gene == Gene Tiso_gene_8801 == * right end position: ** 2059 * transcription direction: ** POSITIVE * left end position: ** 420 * centisome position: ** 4.256613...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=F16BDEPHOS-RXN F16BDEPHOS-RXN] ==
+
== Gene Tiso_gene_8801 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 2059
−
* common name:
+
* transcription direction:
−
** fructose-_-bisphosphatase
+
** POSITIVE
−
** chloroplast_fructose-_-bisphosphatase
+
* left end position:
−
* ec number:
+
** 420
−
** [http://enzyme.expasy.org/EC/3.1.3.11 EC-3.1.3.11]
+
* centisome position:
 +
** 4.256613   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[RXN-15556]]
−
** 1 [[WATER]][c] '''+''' 1 [[FRUCTOSE-16-DIPHOSPHATE]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[FRUCTOSE-6P]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: ec-number
−
** 1 H2O[c] '''+''' 1 fructose 1,6-bisphosphate[c] '''=>''' 1 phosphate[c] '''+''' 1 β-D-fructofuranose 6-phosphate[c]
+
* Reaction: [[UBIQUITIN--PROTEIN-LIGASE-RXN]]
−
 
+
** Source: [[annotation-in-silico_annotation]]
−
== Genes associated with this reaction  ==
+
*** Assignment: ec-number
−
Genes have been associated with this reaction based on different elements listed below.
+
== Pathways associated ==
−
* [[Tiso_gene_4904]]
+
* [[PWY-7511]]
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_3483]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_4905]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_8226]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
* [[Tiso_gene_15398]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_16502]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_9435]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
== Pathways  ==
+
−
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
+
−
** '''13''' reactions found over '''13''' reactions in the full pathway
+
−
* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis): [http://metacyc.org/META/NEW-IMAGE?object=SUCSYN-PWY SUCSYN-PWY]
+
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
−
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
+
−
** '''12''' reactions found over '''12''' reactions in the full pathway
+
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
+
−
** '''13''' reactions found over '''13''' reactions in the full pathway
+
−
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
+
−
** '''11''' reactions found over '''11''' reactions in the full pathway
+
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
+
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
−
* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
+
−
** '''10''' reactions found over '''12''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[creinhardtii]]
+
−
*** [[athaliana]]
+
−
*** [[esiliculosus]]
+
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=2059}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11064 11064]
+
{{#set: transcription direction=POSITIVE}}
−
* LIGAND-RXN:
+
{{#set: left end position=420}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00762 R00762]
+
{{#set: centisome position=4.256613    }}
−
* UNIPROT:
+
{{#set: reaction associated=RXN-15556|UBIQUITIN--PROTEIN-LIGASE-RXN}}
−
** [http://www.uniprot.org/uniprot/P09199 P09199]
+
{{#set: pathway associated=PWY-7511}}
−
** [http://www.uniprot.org/uniprot/P19112 P19112]
+
−
** [http://www.uniprot.org/uniprot/P22780 P22780]
+
−
** [http://www.uniprot.org/uniprot/P09467 P09467]
+
−
** [http://www.uniprot.org/uniprot/Q9JUL6 Q9JUL6]
+
−
** [http://www.uniprot.org/uniprot/Q9CIU9 Q9CIU9]
+
−
** [http://www.uniprot.org/uniprot/P09202 P09202]
+
−
** [http://www.uniprot.org/uniprot/Q45597 Q45597]
+
−
** [http://www.uniprot.org/uniprot/P45292 P45292]
+
−
** [http://www.uniprot.org/uniprot/Q9PP83 Q9PP83]
+
−
** [http://www.uniprot.org/uniprot/P19912 P19912]
+
−
** [http://www.uniprot.org/uniprot/P19911 P19911]
+
−
** [http://www.uniprot.org/uniprot/Q9HGZ4 Q9HGZ4]
+
−
** [http://www.uniprot.org/uniprot/P09201 P09201]
+
−
** [http://www.uniprot.org/uniprot/P0A993 P0A993]
+
−
** [http://www.uniprot.org/uniprot/P00636 P00636]
+
−
** [http://www.uniprot.org/uniprot/P23014 P23014]
+
−
** [http://www.uniprot.org/uniprot/P27994 P27994]
+
−
** [http://www.uniprot.org/uniprot/P14766 P14766]
+
−
** [http://www.uniprot.org/uniprot/P09195 P09195]
+
−
** [http://www.uniprot.org/uniprot/Q7M0S7 Q7M0S7]
+
−
** [http://www.uniprot.org/uniprot/P25851 P25851]
+
−
** [http://www.uniprot.org/uniprot/Q05079 Q05079]
+
−
** [http://www.uniprot.org/uniprot/P46275 P46275]
+
−
** [http://www.uniprot.org/uniprot/P46276 P46276]
+
−
** [http://www.uniprot.org/uniprot/Q43139 Q43139]
+
−
** [http://www.uniprot.org/uniprot/P00637 P00637]
+
−
** [http://www.uniprot.org/uniprot/O65827 O65827]
+
−
** [http://www.uniprot.org/uniprot/Q42796 Q42796]
+
−
** [http://www.uniprot.org/uniprot/P46267 P46267]
+
−
** [http://www.uniprot.org/uniprot/Q07204 Q07204]
+
−
** [http://www.uniprot.org/uniprot/P22418 P22418]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=fructose-_-bisphosphatase}}
+
−
{{#set: common name=chloroplast_fructose-_-bisphosphatase}}
+
−
{{#set: ec number=EC-3.1.3.11}}
+
−
{{#set: gene associated=Tiso_gene_4904|Tiso_gene_3483|Tiso_gene_4905|Tiso_gene_8226|Tiso_gene_15398|Tiso_gene_16502|Tiso_gene_9435}}
+
−
{{#set: in pathway=GLUCONEO-PWY|SUCSYN-PWY|GLYCOLYSIS|CALVIN-PWY|PWY-5484|P185-PWY|PWY66-399}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=creinhardtii|athaliana|esiliculosus}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 19:13, 21 March 2018

Gene Tiso_gene_8801

  • right end position:
    • 2059
  • transcription direction:
    • POSITIVE
  • left end position:
    • 420
  • centisome position:
    • 4.256613
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_8801&oldid=40220"