Difference between revisions of "Tiso gene 6187"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.18.1.2-RXN 1.18.1.2-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ferredoxin--nadp_embr...")
(Created page with "Category:Gene == Gene Tiso_gene_6187 == * right end position: ** 3613 * transcription direction: ** NEGATIVE * left end position: ** 846 * centisome position: ** 6.792453...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.18.1.2-RXN 1.18.1.2-RXN] ==
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== Gene Tiso_gene_6187 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 3613
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* common name:
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* transcription direction:
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** ferredoxin--nadp_embryochloroplastic
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** NEGATIVE
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** ferredoxin--nadp_root_isozyme_chloroplastic
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* left end position:
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* ec number:
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** 846
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** [http://enzyme.expasy.org/EC/1.18.1.2 EC-1.18.1.2]
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* centisome position:
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** 6.792453   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3.2.1.21-RXN]]
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** 1 [[NADP]][c] '''+''' 2 [[Reduced-ferredoxins]][e] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADPH]][c] '''+''' 2 [[Oxidized-ferredoxins]][e]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 NADP+[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[e] '''+''' 1 H+[c] '''=>''' 1 NADPH[c] '''+''' 2 an oxidized ferredoxin [iron-sulfur] cluster[e]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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* Reaction: [[RXN-10769]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_20055]]
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*** Assignment: ec-number
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** IN-SILICO_ANNOTATION
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** Source: [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** Assignment: ec-number
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* [[Tiso_gene_17170]]
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* Reaction: [[RXN-10773]]
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** IN-SILICO_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** Assignment: ec-number
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** EXPERIMENTAL_ANNOTATION
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** Source: [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** Assignment: ec-number
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* [[Tiso_gene_17381]]
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* Reaction: [[RXN-13602]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_20168]]
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*** Assignment: ec-number
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** IN-SILICO_ANNOTATION
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** Source: [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** Assignment: ec-number
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* [[Tiso_gene_20054]]
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* Reaction: [[RXN-13603]]
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** IN-SILICO_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** Assignment: ec-number
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** EXPERIMENTAL_ANNOTATION
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** Source: [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** Assignment: ec-number
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* [[Tiso_gene_19031]]
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* Reaction: [[RXN-14179]]
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** IN-SILICO_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** Assignment: ec-number
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== Pathways  ==
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** Source: [[annotation-experimental_annotation]]
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* [[PWY-7230]], ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7230 PWY-7230]
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*** Assignment: ec-number
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** '''1''' reactions found over '''12''' reactions in the full pathway
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* Reaction: [[RXN-5341]]
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* [[PWY-101]], photosynthesis light reactions: [http://metacyc.org/META/NEW-IMAGE?object=PWY-101 PWY-101]
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** Source: [[annotation-in-silico_annotation]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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*** Assignment: ec-number
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== Reconstruction information  ==
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** Source: [[annotation-experimental_annotation]]
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* Category: [[orthology]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-8036]]
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*** Tool: [[pantograph]]
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** Source: [[annotation-in-silico_annotation]]
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* Category: [[manual]]
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*** Assignment: ec-number
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** Source: [[manual-primary_network]]
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** Source: [[annotation-experimental_annotation]]
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* Category: [[annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-9674]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-3121]]
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* [[PWY-6002]]
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* [[PWY-6788]]
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* [[PWY-5176]]
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* [[PWY-7092]]
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* [[PWY-7091]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=3613}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01195 R01195]
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{{#set: transcription direction=NEGATIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=846}}
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{{#set: common name=ferredoxin--nadp_embryochloroplastic}}
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{{#set: centisome position=6.792453    }}
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{{#set: common name=ferredoxin--nadp_root_isozyme_chloroplastic}}
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{{#set: reaction associated=3.2.1.21-RXN|RXN-10769|RXN-10773|RXN-13602|RXN-13603|RXN-14179|RXN-5341|RXN-8036|RXN-9674}}
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{{#set: ec number=EC-1.18.1.2}}
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{{#set: pathway associated=PWY-3121|PWY-6002|PWY-6788|PWY-5176|PWY-7092|PWY-7091}}
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{{#set: gene associated=Tiso_gene_20055|Tiso_gene_17170|Tiso_gene_17381|Tiso_gene_20168|Tiso_gene_20054|Tiso_gene_19031}}
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{{#set: in pathway=PWY-7230|PWY-101}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:13, 21 March 2018

Gene Tiso_gene_6187

  • right end position:
    • 3613
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 846
  • centisome position:
    • 6.792453
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_6187&oldid=40249"