Difference between revisions of "1.18.1.2-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-63 PWY-63] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-82115 TAX-82115...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.18.1.2-RXN 1.18.1.2-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ferredoxin--nadp_embr...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-63 PWY-63] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.18.1.2-RXN 1.18.1.2-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-82115 TAX-82115]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3193 TAX-3193]
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* common name:
 
* common name:
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** UDP-L-arabinose biosynthesis I (from UDP-xylose)
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** ferredoxin--nadp_embryochloroplastic
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** ferredoxin--nadp_root_isozyme_chloroplastic
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* ec number:
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** [http://enzyme.expasy.org/EC/1.18.1.2 EC-1.18.1.2]
 
* Synonym(s):
 
* Synonym(s):
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** UDP-L-arabinose biosynthesis (de novo synthesis)
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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  '''1''' reactions found over '''1''' reactions in the full pathway
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* With identifiers:
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* [[UDP-ARABINOSE-4-EPIMERASE-RXN]]
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** 1 [[NADP]][c] '''+''' 2 [[Reduced-ferredoxins]][e] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADPH]][c] '''+''' 2 [[Oxidized-ferredoxins]][e]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_15395]]
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** 1 NADP+[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[e] '''+''' 1 H+[c] '''=>''' 1 NADPH[c] '''+''' 2 an oxidized ferredoxin [iron-sulfur] cluster[e]
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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== Reaction(s) not found ==
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* Gene: [[Tiso_gene_20055]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_17170]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_17381]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_20054]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_20168]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_19031]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways ==
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* [[PWY-7230]], ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7230 PWY-7230]
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** '''1''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-101]], photosynthesis light reactions: [http://metacyc.org/META/NEW-IMAGE?object=PWY-101 PWY-101]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* ARACYC:
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* LIGAND-RXN:
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-63 PWY-63]
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** [http://www.genome.jp/dbget-bin/www_bget?R01195 R01195]
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{{#set: taxonomic range=TAX-82115}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-3193}}
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{{#set: common name=ferredoxin--nadp_embryochloroplastic}}
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{{#set: common name=UDP-L-arabinose biosynthesis I (from UDP-xylose)}}
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{{#set: common name=ferredoxin--nadp_root_isozyme_chloroplastic}}
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{{#set: common name=UDP-L-arabinose biosynthesis (de novo synthesis)}}
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{{#set: ec number=EC-1.18.1.2}}
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{{#set: reaction found=1}}
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{{#set: gene associated=Tiso_gene_20055|Tiso_gene_17170|Tiso_gene_17381|Tiso_gene_20054|Tiso_gene_20168|Tiso_gene_19031}}
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{{#set: total reaction=1}}
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{{#set: in pathway=PWY-7230|PWY-101}}
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{{#set: completion rate=100.0}}
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{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:13, 21 March 2018

Reaction 1.18.1.2-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ferredoxin--nadp_embryochloroplastic
    • ferredoxin--nadp_root_isozyme_chloroplastic
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7230, ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic): PWY-7230
    • 1 reactions found over 12 reactions in the full pathway
  • PWY-101, photosynthesis light reactions: PWY-101
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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