Difference between revisions of "PWY-3661"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYRIBONUCSYN-RXN GLYRIBONUCSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphoribo...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661 PWY-3661] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYRIBONUCSYN-RXN GLYRIBONUCSYN-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661 PWY-3661] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** phosphoribosylamine--glycine_ligase
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** glycine betaine degradation I
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* ec number:
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** [http://enzyme.expasy.org/EC/6.3.4.13 EC-6.3.4.13]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''4''' reactions found over '''7''' reactions in the full pathway
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** 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''+''' 1 [[GLY]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[5-PHOSPHO-RIBOSYL-GLYCINEAMIDE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[PROTON]][c]
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* [[DIMETHYLGLYCINE-DEHYDROGENASE-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 5-phospho-β-D-ribosylamine[c] '''+''' 1 glycine[c] '''+''' 1 ATP[c] '''=>''' 1 N1-(5-phospho-β-D-ribosyl)glycinamide[c] '''+''' 1 ADP[c] '''+''' 1 phosphate[c] '''+''' 1 H+[c]
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*** [[Tiso_gene_2717]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[GLYOHMETRANS-RXN]]
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* [[Tiso_gene_1369]]
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** 4 associated gene(s):
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_16153]]
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***EC-NUMBER
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*** [[Tiso_gene_7776]]
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_18652]]
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***EC-NUMBER
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*** [[Tiso_gene_16154]]
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** [[pantograph]]-[[athaliana]]
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** 4 reconstruction source(s) associated:
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** [[pantograph]]-[[esiliculosus]]
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*** [[annotation-experimental_annotation]]
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== Pathways  ==
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*** [[manual-primary_network]]
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* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6121 PWY-6121]
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*** [[annotation-in-silico_annotation]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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*** [[orthology-esiliculosus]]
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* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6122 PWY-6122]
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* [[RXN-15124]]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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** 0 associated gene:
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* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277]
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** 2 reconstruction source(s) associated:
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** '''6''' reactions found over '''9''' reactions in the full pathway
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*** [[annotation-experimental_annotation]]
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== Reconstruction information  ==
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*** [[annotation-in-silico_annotation]]
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* Category: [[orthology]]
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* [[RXN-15127]]
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** Source: [[orthology-athaliana]]
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** 0 associated gene:
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*** Tool: [[pantograph]]
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** 2 reconstruction source(s) associated:
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-experimental_annotation]]
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*** Tool: [[pantograph]]
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*** [[annotation-in-silico_annotation]]
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* Category: [[manual]]
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== Reaction(s) not found ==
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** Source: [[manual-primary_network]]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.1.1.5-RXN 2.1.1.5-RXN]
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* Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15125 RXN-15125]
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=SARCOX-RXN SARCOX-RXN]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-2759}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17453 17453]
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{{#set: taxonomic range=TAX-2157}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04144 R04144]
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{{#set: common name=glycine betaine degradation I}}
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* UNIPROT:
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{{#set: reaction found=4}}
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** [http://www.uniprot.org/uniprot/P07244 P07244]
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{{#set: total reaction=7}}
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** [http://www.uniprot.org/uniprot/Q58347 Q58347]
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{{#set: completion rate=57.0}}
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** [http://www.uniprot.org/uniprot/P12039 P12039]
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** [http://www.uniprot.org/uniprot/P21872 P21872]
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** [http://www.uniprot.org/uniprot/P15640 P15640]
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** [http://www.uniprot.org/uniprot/P00967 P00967]
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** [http://www.uniprot.org/uniprot/P16340 P16340]
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** [http://www.uniprot.org/uniprot/P22102 P22102]
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** [http://www.uniprot.org/uniprot/Q9JWU6 Q9JWU6]
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** [http://www.uniprot.org/uniprot/P43845 P43845]
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** [http://www.uniprot.org/uniprot/Q9PN47 Q9PN47]
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** [http://www.uniprot.org/uniprot/Q64737 Q64737]
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** [http://www.uniprot.org/uniprot/P20772 P20772]
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** [http://www.uniprot.org/uniprot/P26977 P26977]
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** [http://www.uniprot.org/uniprot/Q59492 Q59492]
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** [http://www.uniprot.org/uniprot/P74232 P74232]
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** [http://www.uniprot.org/uniprot/Q42804 Q42804]
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** [http://www.uniprot.org/uniprot/P52421 P52421]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=phosphoribosylamine--glycine_ligase}}
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{{#set: ec number=EC-6.3.4.13}}
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{{#set: gene associated=Tiso_gene_1369}}
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{{#set: in pathway=PWY-6121|PWY-6122|PWY-6277}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation|orthology-athaliana|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:13, 21 March 2018

Pathway PWY-3661

Reaction(s) found

4 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-3661&oldid=40270"