Difference between revisions of "DTMPKI-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYRIBONUCSYN-RXN GLYRIBONUCSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphoribo...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTMPKI-RXN DTMPKI-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** thymidylate_kinase * ec n...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYRIBONUCSYN-RXN GLYRIBONUCSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTMPKI-RXN DTMPKI-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** phosphoribosylamine--glycine_ligase
+
** thymidylate_kinase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.3.4.13 EC-6.3.4.13]
+
** [http://enzyme.expasy.org/EC/2.7.4.12 EC-2.7.4.12]
 +
** [http://enzyme.expasy.org/EC/2.7.4.13 EC-2.7.4.13]
 +
** [http://enzyme.expasy.org/EC/2.7.4.9 EC-2.7.4.9]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''+''' 1 [[GLY]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[5-PHOSPHO-RIBOSYL-GLYCINEAMIDE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[TMP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[TDP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 5-phospho-β-D-ribosylamine[c] '''+''' 1 glycine[c] '''+''' 1 ATP[c] '''=>''' 1 phosphate[c] '''+''' 1 N1-(5-phospho-β-D-ribosyl)glycinamide[c] '''+''' 1 ADP[c] '''+''' 1 H+[c]
+
** 1 ATP[c] '''+''' 1 dTMP[c] '''=>''' 1 ADP[c] '''+''' 1 dTDP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_1369]]
+
* Gene: [[Tiso_gene_3755]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[orthology-athaliana]]
+
−
** Source: [[orthology-esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6121 PWY-6121]
+
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''8''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6122 PWY-6122]
+
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277]
+
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7197 PWY-7197]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
 +
** '''12''' reactions found over '''17''' reactions in the full pathway
 +
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[manual]]
 
* Category: [[manual]]
 
** Source: [[manual-primary_network]]
 
** Source: [[manual-primary_network]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17453 17453]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13517 13517]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04144 R04144]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02094 R02094]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P07244 P07244]
+
** [http://www.uniprot.org/uniprot/Q57741 Q57741]
−
** [http://www.uniprot.org/uniprot/Q58347 Q58347]
+
** [http://www.uniprot.org/uniprot/Q9PPF3 Q9PPF3]
−
** [http://www.uniprot.org/uniprot/P12039 P12039]
+
** [http://www.uniprot.org/uniprot/P0A720 P0A720]
−
** [http://www.uniprot.org/uniprot/P21872 P21872]
+
** [http://www.uniprot.org/uniprot/Q8X8H7 Q8X8H7]
−
** [http://www.uniprot.org/uniprot/P15640 P15640]
+
** [http://www.uniprot.org/uniprot/Q9JVE7 Q9JVE7]
−
** [http://www.uniprot.org/uniprot/P00967 P00967]
+
** [http://www.uniprot.org/uniprot/P33803 P33803]
−
** [http://www.uniprot.org/uniprot/P16340 P16340]
+
** [http://www.uniprot.org/uniprot/P42490 P42490]
−
** [http://www.uniprot.org/uniprot/P22102 P22102]
+
** [http://www.uniprot.org/uniprot/P00572 P00572]
−
** [http://www.uniprot.org/uniprot/Q9JWU6 Q9JWU6]
+
** [http://www.uniprot.org/uniprot/Q80HT9 Q80HT9]
−
** [http://www.uniprot.org/uniprot/P43845 P43845]
+
** [http://www.uniprot.org/uniprot/P68693 P68693]
−
** [http://www.uniprot.org/uniprot/Q9PN47 Q9PN47]
+
** [http://www.uniprot.org/uniprot/P23919 P23919]
−
** [http://www.uniprot.org/uniprot/Q64737 Q64737]
+
** [http://www.uniprot.org/uniprot/P36590 P36590]
−
** [http://www.uniprot.org/uniprot/P20772 P20772]
+
** [http://www.uniprot.org/uniprot/Q9RA29 Q9RA29]
−
** [http://www.uniprot.org/uniprot/P26977 P26977]
+
** [http://www.uniprot.org/uniprot/O81650 O81650]
−
** [http://www.uniprot.org/uniprot/Q59492 Q59492]
+
−
** [http://www.uniprot.org/uniprot/P74232 P74232]
+
−
** [http://www.uniprot.org/uniprot/Q42804 Q42804]
+
−
** [http://www.uniprot.org/uniprot/P52421 P52421]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=phosphoribosylamine--glycine_ligase}}
+
{{#set: common name=thymidylate_kinase}}
−
{{#set: ec number=EC-6.3.4.13}}
+
{{#set: ec number=EC-2.7.4.12}}
−
{{#set: gene associated=Tiso_gene_1369}}
+
{{#set: ec number=EC-2.7.4.13}}
−
{{#set: in pathway=PWY-6121|PWY-6122|PWY-6277}}
+
{{#set: ec number=EC-2.7.4.9}}
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
{{#set: gene associated=Tiso_gene_3755}}
−
{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation|orthology-athaliana|orthology-esiliculosus}}
+
{{#set: in pathway=PWY-7210|PWY-7198|PWY-7184|PWY-7187|PWY-7197|PWY0-166|PWY-6545}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction category=manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:13, 21 March 2018

Reaction DTMPKI-RXN

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 dTMP[c] => 1 ADP[c] + 1 dTDP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP: PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198, pyrimidine deoxyribonucleotides de novo biosynthesis IV: PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I: PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7187, pyrimidine deoxyribonucleotides de novo biosynthesis II: PWY-7187
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7197, pyrimidine deoxyribonucleotide phosphorylation: PWY-7197
    • 4 reactions found over 4 reactions in the full pathway
  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): PWY0-166
    • 12 reactions found over 17 reactions in the full pathway
  • PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III: PWY-6545
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=DTMPKI-RXN&oldid=40271"