Difference between revisions of "RXN-13722"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYRIBONUCSYN-RXN GLYRIBONUCSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphoribo...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13722 RXN-13722] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/4.2...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYRIBONUCSYN-RXN GLYRIBONUCSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13722 RXN-13722] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
−
* common name:
+
−
** phosphoribosylamine--glycine_ligase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.3.4.13 EC-6.3.4.13]
+
** [http://enzyme.expasy.org/EC/4.2.1.114 EC-4.2.1.114]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[GLY]][c] '''+''' 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[5-PHOSPHO-RIBOSYL-GLYCINEAMIDE]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[HOMO-CIT]][c] '''<=>''' 1 [[HOMO-I-CIT]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 glycine[c] '''+''' 1 5-phospho-&beta;-D-ribosylamine[c] '''=>''' 1 ADP[c] '''+''' 1 phosphate[c] '''+''' 1 N1-(5-phospho-&beta;-D-ribosyl)glycinamide[c] '''+''' 1 H+[c]
+
** 1 (2R)-homocitrate[c] '''<=>''' 1 (1R,2S)-homoisocitrate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_1369]]
+
* Gene: [[Tiso_gene_12778]]
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-esiliculosus]]
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***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
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−
***EC-NUMBER
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−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6121 PWY-6121]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6122 PWY-6122]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277]
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
*** [[athaliana]]
+
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17453 17453]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32304 32304]
−
* LIGAND-RXN:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R04144 R04144]
+
{{#set: ec number=EC-4.2.1.114}}
−
* UNIPROT:
+
{{#set: gene associated=Tiso_gene_12778}}
−
** [http://www.uniprot.org/uniprot/P07244 P07244]
+
{{#set: in pathway=}}
−
** [http://www.uniprot.org/uniprot/Q58347 Q58347]
+
−
** [http://www.uniprot.org/uniprot/P12039 P12039]
+
−
** [http://www.uniprot.org/uniprot/P21872 P21872]
+
−
** [http://www.uniprot.org/uniprot/P15640 P15640]
+
−
** [http://www.uniprot.org/uniprot/P00967 P00967]
+
−
** [http://www.uniprot.org/uniprot/P16340 P16340]
+
−
** [http://www.uniprot.org/uniprot/P22102 P22102]
+
−
** [http://www.uniprot.org/uniprot/Q9JWU6 Q9JWU6]
+
−
** [http://www.uniprot.org/uniprot/P43845 P43845]
+
−
** [http://www.uniprot.org/uniprot/Q9PN47 Q9PN47]
+
−
** [http://www.uniprot.org/uniprot/Q64737 Q64737]
+
−
** [http://www.uniprot.org/uniprot/P20772 P20772]
+
−
** [http://www.uniprot.org/uniprot/P26977 P26977]
+
−
** [http://www.uniprot.org/uniprot/Q59492 Q59492]
+
−
** [http://www.uniprot.org/uniprot/P74232 P74232]
+
−
** [http://www.uniprot.org/uniprot/Q42804 Q42804]
+
−
** [http://www.uniprot.org/uniprot/P52421 P52421]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=phosphoribosylamine--glycine_ligase}}
+
−
{{#set: ec number=EC-6.3.4.13}}
+
−
{{#set: gene associated=Tiso_gene_1369}}
+
−
{{#set: in pathway=PWY-6121|PWY-6122|PWY-6277}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=esiliculosus|athaliana}}
 
−
{{#set: reconstruction category=manual}}
 
−
{{#set: reconstruction source=primary_network}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Latest revision as of 20:13, 21 March 2018

Reaction RXN-13722

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (2R)-homocitrate[c] <=> 1 (1R,2S)-homoisocitrate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-13722&oldid=40280"