Difference between revisions of "Tiso gene 19622"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYRIBONUCSYN-RXN GLYRIBONUCSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphoribo...")
 
(Created page with "Category:Gene == Gene Tiso_gene_19622 == * right end position: ** 2037 * transcription direction: ** POSITIVE * left end position: ** 203 * centisome position: ** 9.385114...")
 
(4 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYRIBONUCSYN-RXN GLYRIBONUCSYN-RXN] ==
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== Gene Tiso_gene_19622 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 2037
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* common name:
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* transcription direction:
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** phosphoribosylamine--glycine_ligase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/6.3.4.13 EC-6.3.4.13]
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** 203
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* centisome position:
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** 9.385114   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-11839]]
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** 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[GLY]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[5-PHOSPHO-RIBOSYL-GLYCINEAMIDE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 5-phospho-β-D-ribosylamine[c] '''+''' 1 ATP[c] '''+''' 1 glycine[c] '''=>''' 1 phosphate[c] '''+''' 1 ADP[c] '''+''' 1 H+[c] '''+''' 1 N1-(5-phospho-β-D-ribosyl)glycinamide[c]
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* Reaction: [[RXN-11840]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-11841]]
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* [[Tiso_gene_1369]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: automated-name-match
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***EC-NUMBER
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* Reaction: [[RXN-11842]]
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** EXPERIMENTAL_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** Assignment: automated-name-match
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** [[pantograph]]-[[athaliana]]
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* Reaction: [[TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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== Pathways  ==
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*** Assignment: automated-name-match
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* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6121 PWY-6121]
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** Source: [[annotation-experimental_annotation]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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*** Assignment: automated-name-match
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* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6122 PWY-6122]
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** Source: [[orthology-esiliculosus]]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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== Pathways associated ==
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* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=2037}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17453 17453]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=203}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04144 R04144]
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{{#set: centisome position=9.385114    }}
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* UNIPROT:
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{{#set: reaction associated=RXN-11839|RXN-11840|RXN-11841|RXN-11842|TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN}}
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** [http://www.uniprot.org/uniprot/P07244 P07244]
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** [http://www.uniprot.org/uniprot/Q58347 Q58347]
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** [http://www.uniprot.org/uniprot/P12039 P12039]
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** [http://www.uniprot.org/uniprot/P21872 P21872]
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** [http://www.uniprot.org/uniprot/P15640 P15640]
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** [http://www.uniprot.org/uniprot/P00967 P00967]
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** [http://www.uniprot.org/uniprot/P16340 P16340]
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** [http://www.uniprot.org/uniprot/P22102 P22102]
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** [http://www.uniprot.org/uniprot/Q9JWU6 Q9JWU6]
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** [http://www.uniprot.org/uniprot/P43845 P43845]
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** [http://www.uniprot.org/uniprot/Q9PN47 Q9PN47]
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** [http://www.uniprot.org/uniprot/Q64737 Q64737]
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** [http://www.uniprot.org/uniprot/P20772 P20772]
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** [http://www.uniprot.org/uniprot/P26977 P26977]
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** [http://www.uniprot.org/uniprot/Q59492 Q59492]
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** [http://www.uniprot.org/uniprot/P74232 P74232]
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** [http://www.uniprot.org/uniprot/Q42804 Q42804]
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** [http://www.uniprot.org/uniprot/P52421 P52421]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=phosphoribosylamine--glycine_ligase}}
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{{#set: ec number=EC-6.3.4.13}}
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{{#set: gene associated=Tiso_gene_1369}}
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{{#set: in pathway=PWY-6121|PWY-6122|PWY-6277}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=athaliana|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:14, 21 March 2018

Gene Tiso_gene_19622

  • right end position:
    • 2037
  • transcription direction:
    • POSITIVE
  • left end position:
    • 203
  • centisome position:
    • 9.385114
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_19622&oldid=40313"